Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Reverse (-)

21324725 .. 21325480

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGTTCCAAGGCTTTCATTTGCTGTGGTCTTTTCCTTGCCATTGTCCTTCTCATCTCCTCCGAAGTGGCCACAAATGCTGCGGAGGAAGCTACAAATCCCAATGTAGGTGATGCTAAATATGGTGGAGGGTACCAGGGAGATCCGGGTCGTGGGGGATACGGTGGCAACCCGGGACACGGTGGAAATGGAGGAGGAGGAGGAGGAGGAGAAGGGCGTTGCTACTATGGTTGCTGCAGGCGCAGTTACAATGGAAGAGAGTGCGTAAGGTGCTGCAACCATGCTAATGAGGTTGTTGATGCACAACCTCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

106

Amino Acids

10.64

Weight (kDa)

6.04

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	69
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	107, 152, 179
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	3 cut(s)	80, 234, 273
Asp718I	GGTACC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	243
AsuC2I	CCSGG	3 cut(s)	147, 173, 174
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	67, 221, 260
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	152
BcnI	CCSGG	3 cut(s)	147, 173, 174
BfmI	CTRYAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	81, 235, 274
BlsI	GCNGC	3 cut(s)	82, 236, 275
Bme1390I	CCNGG	4 cut(s)	137, 147, 173, 174
BmeT110I	CYCGRG	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	7, 134
BmrFI	CCNGG	4 cut(s)	137, 147, 173, 174
BmsI	GCATC	2 cut(s)	103, 289
BpuMI	CCSGG	3 cut(s)	147, 173, 174
BsaJI	CCNNGG	3 cut(s)	9, 136, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 152, 179
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	9, 136, 172
BseLI	CCNNNNNNNGG	3 cut(s)	107, 152, 179
BseRI	GAGGAG	7 cut(s)	49, 207, 210, 213, 216, 219, 222
BseXI	GCAGC	3 cut(s)	67, 221, 260
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	146, 173
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	107, 152, 179
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	7, 134
BspMAI	CTGCAG	1 cut(s)	239
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	9, 136, 172
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	164, 182
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 89, 240, 270
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	135, 145, 171, 172
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	67, 221, 260
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	243
Cfr9I	CCCGGG	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	3 cut(s)	14, 71, 92
CviKI_1	RGCY	3 cut(s)	14, 71, 92
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	284
FaiI	YATR	3 cut(s)	123, 228, 282
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	81, 235, 274
Fsp4HI	GCNGC	3 cut(s)	81, 235, 274
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	81, 235, 274
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	146, 173
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	146, 173
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	59, 206
HpyCH4III	ACNGT	2 cut(s)	164, 182
HpyCH4V	TGCA	3 cut(s)	237, 276, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 89, 240, 270
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	122, 149, 159, 186, 223
Lsp1109I	GCAGC	3 cut(s)	67, 221, 260
LweI	GCATC	2 cut(s)	103, 289
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	2 cut(s)	146, 173
MspR9I	CCNGG	4 cut(s)	137, 147, 173, 174
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	77, 89, 240, 270
NciI	CCSGG	3 cut(s)	147, 173, 174
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	7, 134
PkrI	GCNGC	3 cut(s)	82, 236, 275
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	7, 134
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	3 cut(s)	81, 235, 274
Sau3AI	GATC	1 cut(s)	142
ScrFI	CCNGG	4 cut(s)	137, 147, 173, 174
SetI	ASST	5 cut(s)	94, 112, 272, 294, 310
SfaNI	GCATC	2 cut(s)	103, 289
SfcI	CTRYAG	1 cut(s)	235
SmaI	CCCGGG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	285
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	135, 145, 171, 172
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	164, 182
TseI	GCWGC	3 cut(s)	80, 234, 273
TspDTI	ATGAA	1 cut(s)	7
TspMI	CCCGGG	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.