Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

3161005 .. 3161624

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTTCCAAGACTTTCATTTACTTTGGTCTTTTGCTTGCCATTGTCCTTCTCATTTCCTCTGACGTGGCCGCAAATGCTGCGGAGACTACTACAAATCCCAATGGTGTAGGTGACGCCAAGTATGGTGGCGGGTACCAAGGAGATCCTGGGCGAGGTGGGTATGGTGGCAACCCTGGTCGTGGGGGTTACGGTGGAGGAGGTCATGGCGGAAATGGAGGAGGAGTCCGTGGAGGGCGTTGCTACTATGGTTGTTGCAGATGGAGTTACAATGGAAGAGAGTGCCTAAGGTGCTGCAATCATGCTGGTCAGGCTGTTGATGCACAACCTCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

113

Amino Acids

11.38

Weight (kDa)

8.58

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	135
AciI	CCGC	4 cut(s)	72, 83, 132, 210
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	155, 182
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	148, 175
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	80, 294
Asp718I	GGTACC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	67, 281
BccI	CCATC	1 cut(s)	255
BciT130I	CCWGG	2 cut(s)	150, 177
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	337
BisI	GCNGC	3 cut(s)	72, 81, 295
BlsI	GCNGC	3 cut(s)	73, 82, 296
Bme1390I	CCNGG	2 cut(s)	150, 177
BmgBI	CACGTC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	150, 177
BmsI	GCATC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	139, 149, 175, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 182
Bse21I	CCTNAGG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	150, 177
BseDI	CCNNGG	4 cut(s)	139, 149, 175, 229
BseLI	CCNNNNNNNGG	2 cut(s)	155, 182
BseRI	GAGGAG	3 cut(s)	213, 234, 237
BseXI	GCAGC	2 cut(s)	67, 281
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	155, 182
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	4 cut(s)	72, 83, 132, 210
BspANI	GGCC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	135
BssECI	CCNNGG	4 cut(s)	139, 149, 175, 229
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	150, 177
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 80, 291, 311, 320
BstNI	CCWGG	2 cut(s)	150, 177
BstSCI	CCNGG	2 cut(s)	148, 175
BstV1I	GCAGC	2 cut(s)	67, 281
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	39
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	206, 302
CviJI	RGCY	2 cut(s)	71, 314
CviKI_1	RGCY	2 cut(s)	71, 314
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	148, 175
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	209, 305
FaiI	YATR	5 cut(s)	126, 165, 207, 249, 303
FatI	CATG	2 cut(s)	205, 301
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	72, 81, 295
Fsp4HI	GCNGC	3 cut(s)	72, 81, 295
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	3 cut(s)	72, 81, 295
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	209, 305
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	258, 297, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 80, 291, 311, 320
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	209, 305
KpnI	GGTACC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	135, 162, 162, 189, 291, 296
Lsp1109I	GCAGC	2 cut(s)	67, 281
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	337
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	113, 188, 266
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	70, 149, 191, 194, 212, 215, 227, 339
MspR9I	CCNGG	2 cut(s)	150, 177
MvaI	CCWGG	2 cut(s)	150, 177
MwoI	GCNNNNNNNGC	5 cut(s)	77, 80, 291, 311, 320
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	209, 305
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	73, 82, 296
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	148, 175
PspGI	CCWGG	2 cut(s)	148, 175
PspN4I	GGNNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	3 cut(s)	72, 81, 295
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	150, 177
SetI	ASST	6 cut(s)	69, 115, 160, 205, 293, 331
SfaNI	GCATC	1 cut(s)	310
SsiI	CCGC	4 cut(s)	72, 83, 132, 210
SspMI	CTAG	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	148, 175
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	80, 294
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.