Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Reverse (-)

70801891 .. 70802375

Gene Structure 485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTTCCAACAAGGCATTTCTTCTCTTTGGCCTTTTAGTTGCTCTTGTTCTTGTAGTGGCCGCAAGCAGAGACCTCGCTCAGACTTCTACTGAGAAGGAAAATGGGGTGACCACTGAAAGTTCCAACGTTGGCGGCGTAGATGATGCCAAGTACGGTGGATATGGAGGCCCCGGCGGTGGATATCAAGGCGATAATGGTGGATATGGAGGCAACGGCGGAGGGTACCAAGGTGGTAATGGTGGCCGTGGAGGCTACGGTGGTGGAAACCCTGGTTATGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGTGTTACTATGGCTGCTGCAGGCGCAATAACTATGGAAGAGGGTGCAGAAGGTGCTGCTCTCATGCTGATCAGGCTGTTAATAGTACAGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

136

Amino Acids

13.12

Weight (kDa)

7.55

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AciI	CCGC	4 cut(s)	63, 135, 177, 219
AclI	AACGTT	1 cut(s)	129
AcoI	YGGCCR	2 cut(s)	60, 244
AfaI	GTAC	3 cut(s)	155, 227, 397
AfiI	CCNNNNNNNGG	2 cut(s)	179, 278
AjnI	CCWGG	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	4 cut(s)	31, 60, 169, 244
ApeKI	GCWGC	3 cut(s)	324, 327, 366
Asp718I	GGTACC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	121
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BanI	GGYRCC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	311, 314, 353
BceAI	ACGGC	2 cut(s)	231, 232
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	5 cut(s)	63, 136, 325, 328, 367
BlsI	GCNGC	5 cut(s)	64, 137, 326, 329, 368
Bme1390I	CCNGG	2 cut(s)	174, 273
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	3 cut(s)	7, 172, 227
BmrFI	CCNGG	2 cut(s)	174, 273
BmsI	GCATC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	172, 229, 247, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 278
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	4 cut(s)	172, 229, 247, 271
BseLI	CCNNNNNNNGG	2 cut(s)	179, 278
BseMII	CTCAG	2 cut(s)	84, 95
BseRI	GAGGAG	7 cut(s)	297, 306, 309, 312, 315, 318, 321
BseXI	GCAGC	3 cut(s)	311, 314, 353
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	33, 62, 171, 246
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	179, 278
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	33, 62, 171, 246
Bso31I	GGTCTC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	4 cut(s)	63, 135, 177, 219
BspANI	GGCC	4 cut(s)	33, 62, 171, 246
BspCNI	CTCAG	2 cut(s)	85, 94
BspLI	GGNNCC	3 cut(s)	7, 172, 227
BspMAI	CTGCAG	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	172, 229, 247, 271
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	158, 260, 405
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	67, 332
BstDEI	CTNAG	2 cut(s)	81, 93
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 333, 363, 383
BstNI	CCWGG	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	172, 271
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	311, 314, 353
BsuRI	GGCC	4 cut(s)	33, 62, 171, 246
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	67, 332
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	154, 226, 396
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	7 cut(s)	33, 62, 171, 246, 255, 324, 386
CviKI_1	RGCY	7 cut(s)	33, 62, 171, 246, 255, 324, 386
CviQI	GTAC	3 cut(s)	154, 226, 396
DdeI	CTNAG	2 cut(s)	81, 93
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	60, 244
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	377
FaiI	YATR	6 cut(s)	165, 207, 279, 321, 345, 375
FatI	CATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	63, 136, 325, 328, 367
Fsp4HI	GCNGC	5 cut(s)	63, 136, 325, 328, 367
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	5 cut(s)	63, 136, 325, 328, 367
HaeIII	GGCC	4 cut(s)	33, 62, 171, 246
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	91, 354
HpyCH4III	ACNGT	3 cut(s)	158, 260, 405
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	330, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 333, 363, 383
HpyF3I	CTNAG	2 cut(s)	81, 93
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	334
KpnI	GGTACC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LpnPI	CCDG	5 cut(s)	187, 258, 285, 316, 368
Lsp1109I	GCAGC	3 cut(s)	311, 314, 353
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	109, 314
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	14, 360
MmeI	TCCRAC	2 cut(s)	33, 150
MseI	TTAA	1 cut(s)	390
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	174, 273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	252, 333, 363, 383
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	3 cut(s)	7, 172, 227
NmuCI	GTSAC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PkrI	GCNGC	5 cut(s)	64, 137, 326, 329, 368
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	7, 172, 227
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	155, 227, 397
RsaNI	GTAC	3 cut(s)	154, 226, 396
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	63, 136, 325, 328, 367
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	174, 273
SetI	ASST	5 cut(s)	78, 132, 235, 289, 365
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	328
SsiI	CCGC	4 cut(s)	63, 135, 177, 219
StyD4I	CCNGG	2 cut(s)	172, 271
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	158, 260, 405
TaiI	ACGT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	2 cut(s)	65, 138
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	324, 327, 366
Tsp45I	GTSAC	1 cut(s)	109
TspRI	CASTG	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.