Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

2029687 .. 2030544

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTTCCAAGGCTTTAGTTCTGTTTGGTCTATTTGCAGTTCTTCTCGTCGTCACAGAAGTTGCCGCTGCATCCGGTACAGTGAAGTCAGAGAGTGGGGAAACCGTGCAACCTGATCAATATAATGGCGGTCACGGCGGCAATGGAGGCTACAACGGAGGAGGAGGTTACAACGGAGGAGGAGGTCACAACGGAGGAGGTTACAACGGAGGAGGAGGATACAATGGAGGAGGACACGGAGGAAGACATGGTTACTGTCGCTATGGCTGTTGCTACAGAGGTTACCATGGCTGTTCAAGGTGTTGTTCGTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0006950 GO:0007275 GO:0008150 GO:0008361 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0014070 GO:0016043 GO:0016049 GO:0022622 GO:0032501 GO:0032502 GO:0032535 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042493 GO:0046677 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

115

Amino Acids

11.39

Weight (kDa)

7.65

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRP	PF07172	1 - 81	1.1e-19	Glycine rich protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	66, 129, 138
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	212
BclI	TGATCA	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	66, 69, 139
BlsI	GCNGC	3 cut(s)	67, 70, 140
Bme1390I	CCNGG	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	9, 286
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	9, 286
BseGI	GGATG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	347
BseRI	GAGGAG	8 cut(s)	174, 177, 192, 195, 210, 225, 228, 243
BseXI	GCAGC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	3 cut(s)	66, 129, 138
BspCNI	CTCAG	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	9, 286
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	9, 286
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	82, 106, 257
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	286
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 135, 147, 320
BstNI	CCWGG	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	248, 287
CviJI	RGCY	7 cut(s)	5, 14, 150, 267, 291, 323, 337
CviKI_1	RGCY	7 cut(s)	5, 14, 150, 267, 291, 323, 337
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	9, 286
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	9, 286
ErhI	CCWWGG	2 cut(s)	9, 286
FaeI	CATG	2 cut(s)	251, 290
FaiI	YATR	5 cut(s)	123, 249, 264, 288, 312
FatI	CATG	2 cut(s)	247, 286
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	66, 69, 139
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	66, 69, 139
GluI	GCNGC	3 cut(s)	66, 69, 139
GsuI	CTGGAG	1 cut(s)	336
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	251, 290
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	91, 330
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	3 cut(s)	82, 106, 257
HpyCH4V	TGCA	3 cut(s)	38, 71, 109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 135, 147, 320
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	251, 290
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	88, 126, 300, 324
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	80
MaeIII	GTNAC	8 cut(s)	52, 131, 167, 185, 200, 251, 281, 341
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	35, 255
MlyI	GAGTC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	11, 135, 147, 320
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	251, 290
NmuCI	GTSAC	4 cut(s)	52, 131, 185, 341
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	67, 70, 140
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	3 cut(s)	66, 69, 139
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	7 cut(s)	115, 169, 187, 202, 283, 302, 325
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	274
SsiI	CCGC	3 cut(s)	66, 129, 138
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	9, 286
TaaI	ACNGT	3 cut(s)	82, 106, 257
TauI	GCSGC	2 cut(s)	68, 141
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	4 cut(s)	52, 131, 185, 341
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	4 cut(s)	52, 131, 185, 341
TspGWI	ACGGA	5 cut(s)	171, 189, 207, 222, 252
TspRI	CASTG	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.