Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

2033154 .. 2034283

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTCAAAAGCATTGCTTTTTTTAAGTCTCATTGTTGTTCTTCTTATAGCTTCTGAGGTGGTAGCCAGAGACCTCGCTGAGAAATCGGCAGAGCAGAAAAACAATGAAAGAGACGAAGTAAAGCAAACGGAGCAGTTTGGCGGGTTTCCAGGAGGAGGGTATGGAGGGTTCCCGGGAGGAGGGTATGGAGGAAACCCTGGTGGAGGATATGGAAACCGTGGTGGTGGATATAGAAACCGTGATGGAGGATATGGAAACCGCGGTGGAGGATATGGAAACCGAGGAGGAGGATATTGTCGCTATGGTTGCTGCTACAGAGGCTACTACGGTGGCTGCTTCAGGTGTTGTGCTTATGCTGGTCAGGCTGTTCAAACTCAGCCACAGAGTACTGAGCCGGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0006950 GO:0007275 GO:0008150 GO:0008361 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0014070 GO:0016043 GO:0016049 GO:0022622 GO:0032501 GO:0032502 GO:0032535 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042493 GO:0046677 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

135

Amino Acids

14.09

Weight (kDa)

8.75

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRP	PF07172	1 - 96	2.8e-22	Glycine rich protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	144, 262, 264
AcuI	CTGAAG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	158, 182, 206
AgsI	TTSAA	2 cut(s)	9, 374
AjnI	CCWGG	2 cut(s)	151, 199
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	3 cut(s)	35, 66, 108
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	312, 336
AsuC2I	CCSGG	3 cut(s)	176, 177, 399
AvaI	CYCGRG	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	299, 323
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	153, 201
BcnI	CCSGG	3 cut(s)	176, 177, 399
BcoDI	GTCTC	3 cut(s)	35, 66, 108
BfmI	CTRYAG	1 cut(s)	316
BisI	GCNGC	2 cut(s)	313, 337
BlsI	GCNGC	2 cut(s)	314, 338
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	153, 176, 177, 201, 399
BmeT110I	CYCGRG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	5 cut(s)	153, 176, 177, 201, 399
BpuMI	CCSGG	3 cut(s)	176, 177, 399
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	175, 199, 220, 262, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 182, 206
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	153, 201
BseDI	CCNNGG	5 cut(s)	175, 199, 220, 262, 283
BseLI	CCNNNNNNNGG	3 cut(s)	158, 182, 206
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	48, 72, 384, 392
BseRI	GAGGAG	4 cut(s)	171, 195, 300, 303
BseXI	GCAGC	2 cut(s)	299, 323
Bsh1236I	CGCG	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	176, 398
BslI	CCNNNNNNNGG	3 cut(s)	158, 182, 206
BsmAI	GTCTC	3 cut(s)	35, 66, 108
BsmBI	CGTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	175
BspACI	CCGC	3 cut(s)	144, 262, 264
BspCNI	CTCAG	4 cut(s)	49, 73, 385, 391
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	14
BssECI	CCNNGG	5 cut(s)	175, 199, 220, 262, 283
Bst2UI	CCWGG	2 cut(s)	153, 201
Bst4CI	ACNGT	3 cut(s)	221, 242, 332
BstDEI	CTNAG	4 cut(s)	57, 81, 378, 393
BstDSI	CCRYGG	2 cut(s)	220, 262
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	35, 66, 108
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 133, 309, 321, 365
BstNI	CCWGG	2 cut(s)	153, 201
BstSCI	CCNGG	5 cut(s)	151, 174, 175, 199, 397
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	299, 323
BtgI	CCRYGG	2 cut(s)	220, 262
Cfr42I	CCGCGG	1 cut(s)	265
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	8 cut(s)	5, 53, 68, 324, 336, 368, 382, 397
CviKI_1	RGCY	8 cut(s)	5, 53, 68, 324, 336, 368, 382, 397
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	4 cut(s)	57, 81, 378, 393
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	151, 199
Esp3I	CGTCTC	1 cut(s)	108
FaiI	YATR	9 cut(s)	50, 165, 189, 213, 234, 255, 276, 306, 357
FalI	AAGNNNNNCTT	1 cut(s)	35
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	313, 337
Fsp4HI	GCNGC	2 cut(s)	313, 337
GluI	GCNGC	2 cut(s)	313, 337
HapII	CCGG	2 cut(s)	176, 398
HpaII	CCGG	2 cut(s)	176, 398
Hpy188I	TCNGA	1 cut(s)	58
HpyCH4III	ACNGT	3 cut(s)	221, 242, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 133, 309, 321, 365
HpyF3I	CTNAG	4 cut(s)	57, 81, 378, 393
KspI	CCGCGG	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	9 cut(s)	82, 138, 165, 186, 189, 213, 328, 345, 350
Lsp1109I	GCAGC	2 cut(s)	299, 323
MaeIII	GTNAC	1 cut(s)	401
MboII	GAAGA	1 cut(s)	35
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	176, 398
MspR9I	CCNGG	5 cut(s)	153, 176, 177, 201, 399
MvaI	CCWGG	2 cut(s)	153, 201
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	5 cut(s)	11, 133, 309, 321, 365
NciI	CCSGG	3 cut(s)	176, 177, 399
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	314, 338
Psp6I	CCWGG	2 cut(s)	151, 199
PspGI	CCWGG	2 cut(s)	151, 199
PspN4I	GGNNCC	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	155, 187
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	2 cut(s)	313, 337
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	5 cut(s)	153, 176, 177, 201, 399
SetI	ASST	4 cut(s)	55, 63, 78, 347
SfcI	CTRYAG	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SmaI	CCCGGG	1 cut(s)	177
SsiI	CCGC	3 cut(s)	144, 262, 264
StyD4I	CCNGG	5 cut(s)	151, 174, 175, 199, 397
TaaI	ACNGT	3 cut(s)	221, 242, 332
TatI	WGTACW	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	312, 336
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	146
TspMI	CCCGGG	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	204
XmaI	CCCGGG	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.