Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Reverse (-)

32706541 .. 32707589

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGTTCCAACAAGGCTCTTCTTCTCTTGGCTCTTTTGGTTGCTCTTGTTCTTGTAGTGTCCGCAAGCAGAGACCTCGCTCAGACTTCCGCTGAGAAGGAAAATGGGGTGACCACTACTGAAACTTCCAACGTAGGCGGCCTTGATGATGCAAAGTATGGTGGATATCAAGGCGGTAATGGTGGATATGGAGGGTACCAAGGTGGTAATGGCGGCCGTGGAGGGTACCAAGGTGGTAATGGCGGCCGCGGAGGCTACGGTGGAGGAAACCCTGGTTATGGAGGAGGACGAGGAGGAGGGTGTTACTATGGCTGCTGCAGGCGCTTTAACTATGGAAGAGGGTGCAGAAGGTGCTGCGCTTACGCTGGTGAGGCTGTTGAGGCTGCAGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

132

Amino Acids

13.03

Weight (kDa)

8.54

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	195, 225
AccB1I	GGYRCC	2 cut(s)	195, 225
AccII	CGCG	1 cut(s)	249
AciI	CCGC	8 cut(s)	63, 90, 138, 174, 213, 243, 247, 249
AcoI	YGGCCR	2 cut(s)	214, 244
AfaI	GTAC	2 cut(s)	197, 227
AfiI	CCNNNNNNNGG	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	3 cut(s)	139, 214, 244
ApeKI	GCWGC	4 cut(s)	312, 315, 354, 383
Asp718I	GGTACC	2 cut(s)	195, 225
AspLEI	GCGC	2 cut(s)	324, 359
AsuHPI	GGTGA	2 cut(s)	121, 380
BaeI	ACNNNNGTAYC	4 cut(s)	187, 217, 220, 250
BanI	GGYRCC	2 cut(s)	195, 225
BbvI	GCAGC	4 cut(s)	299, 302, 341, 370
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	316, 384
BfoI	RGCGCY	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	8 cut(s)	139, 214, 244, 247, 313, 316, 355, 384
BlsI	GCNGC	8 cut(s)	140, 215, 245, 248, 314, 317, 356, 385
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	3 cut(s)	7, 197, 227
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	199, 217, 229, 247, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	5 cut(s)	199, 217, 229, 247, 271
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	84, 95
BseRI	GAGGAG	3 cut(s)	297, 306, 309
BseX3I	CGGCCG	2 cut(s)	214, 244
BseXI	GCAGC	4 cut(s)	299, 302, 341, 370
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	2 cut(s)	217, 247
BshFI	GGCC	3 cut(s)	141, 216, 246
BshNI	GGYRCC	2 cut(s)	195, 225
BsiEI	CGRYCG	2 cut(s)	217, 247
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	141, 216, 246
Bso31I	GGTCTC	1 cut(s)	66
BspACI	CCGC	8 cut(s)	63, 90, 138, 174, 213, 243, 247, 249
BspANI	GGCC	3 cut(s)	141, 216, 246
BspCNI	CTCAG	2 cut(s)	85, 94
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	7, 197, 227
BspMAI	CTGCAG	2 cut(s)	320, 388
BspQI	GCTCTTC	1 cut(s)	24
BspT107I	GGYRCC	2 cut(s)	195, 225
BspTNI	GGTCTC	1 cut(s)	66
BssECI	CCNNGG	5 cut(s)	199, 217, 229, 247, 271
BssT1I	CCWWGG	2 cut(s)	199, 229
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	2 cut(s)	24, 331
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	67, 320
BstDEI	CTNAG	2 cut(s)	81, 93
BstDSI	CCRYGG	2 cut(s)	217, 247
BstEII	GGTNACC	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	324, 359
BstMAI	GTCTC	1 cut(s)	66
BstMCI	CGRYCG	2 cut(s)	217, 247
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 321, 351, 371, 380
BstNI	CCWGG	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	2 cut(s)	316, 384
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	299, 302, 341, 370
BstZI	CGGCCG	2 cut(s)	214, 244
BsuRI	GGCC	3 cut(s)	141, 216, 246
BtgI	CCRYGG	2 cut(s)	217, 247
Cac8I	GCNNGC	2 cut(s)	67, 320
CciNI	GCGGCCGC	1 cut(s)	244
CfoI	GCGC	2 cut(s)	324, 359
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	196, 226
CviJI	RGCY	9 cut(s)	17, 32, 141, 216, 246, 255, 312, 374, 383
CviKI_1	RGCY	9 cut(s)	17, 32, 141, 216, 246, 255, 312, 374, 383
CviQI	GTAC	2 cut(s)	196, 226
DdeI	CTNAG	2 cut(s)	81, 93
EaeI	YGGCCR	2 cut(s)	214, 244
EagI	CGGCCG	2 cut(s)	214, 244
Eam1104I	CTCTTC	2 cut(s)	24, 331
EarI	CTCTTC	2 cut(s)	24, 331
EclXI	CGGCCG	2 cut(s)	214, 244
Eco130I	CCWWGG	2 cut(s)	199, 229
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	167
Eco52I	CGGCCG	2 cut(s)	214, 244
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	199, 229
ErhI	CCWWGG	2 cut(s)	199, 229
FaiI	YATR	5 cut(s)	159, 189, 279, 309, 333
Fnu4HI	GCNGC	8 cut(s)	139, 214, 244, 247, 313, 316, 355, 384
Fsp4HI	GCNGC	8 cut(s)	139, 214, 244, 247, 313, 316, 355, 384
GlaI	GCGC	2 cut(s)	323, 358
GluI	GCNGC	8 cut(s)	139, 214, 244, 247, 313, 316, 355, 384
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	141, 216, 246
HhaI	GCGC	2 cut(s)	324, 359
Hin6I	GCGC	2 cut(s)	322, 357
HinP1I	GCGC	2 cut(s)	322, 357
HphI	GGTGA	2 cut(s)	121, 380
Hpy188I	TCNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	91, 342
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	152, 318, 345, 386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 321, 351, 371, 380
HpyF3I	CTNAG	2 cut(s)	81, 93
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	2 cut(s)	322, 357
KpnI	GGTACC	2 cut(s)	199, 229
KspI	CCGCGG	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	258, 285, 304, 351
Lsp1109I	GCAGC	4 cut(s)	299, 302, 341, 370
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	109, 302
MboII	GAAGA	3 cut(s)	11, 14, 348
MmeI	TCCRAC	2 cut(s)	33, 153
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	92, 249
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	252, 321, 351, 371, 380
NlaIV	GGNNCC	3 cut(s)	7, 197, 227
NmuCI	GTSAC	1 cut(s)	109
NotI	GCGGCCGC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	24
PkrI	GCNGC	8 cut(s)	140, 215, 245, 248, 314, 317, 356, 385
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	7, 197, 227
PstI	CTGCAG	2 cut(s)	320, 388
RsaI	GTAC	2 cut(s)	197, 227
RsaNI	GTAC	2 cut(s)	196, 226
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	8 cut(s)	139, 214, 244, 247, 313, 316, 355, 384
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	5 cut(s)	78, 135, 205, 235, 353
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	2 cut(s)	316, 384
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SsiI	CCGC	8 cut(s)	63, 90, 138, 174, 213, 243, 247, 249
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	199, 229
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	135
TauI	GCSGC	4 cut(s)	141, 216, 246, 249
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	312, 315, 354, 383
Tsp45I	GTSAC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.