AT2G05440

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001806
Physical Location & Seq
Forward (+)
1993038 .. 1994177
1140 bp
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UTR
Exon/CDS
Intron
AT2G05440.3

Sequence Viewer

Length: 384 bp
ATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCTCAGTTCTTCTCGTCGTCTCCGAAGTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACGGAGGGGGAGGAGGCCACGGACATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGGAGGTGGAGGACACTATGGAGGAGGTGGAGGACACTACGGAGGAGGTGGAGGACACTACGGAGGTGGTGGAGGAGGATACGGAGGTGGAGGAGGACACCACGGAGGAGGAGGCCACGGGCTAAACGAACCTGTTCAGACTAAGCCGGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

127

Amino Acids

11.64

Weight (kDa)

6.47

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 92 3.1e-16 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 153
AciI CCGC 2 cut(s) 69, 132
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 35, 58
AoxI GGCC 4 cut(s) 136, 172, 205, 340
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BalI TGGCCA 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 47, 60, 81, 94
BciVI GTATCC 2 cut(s) 215, 299
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 35, 58
BfuI GTATCC 2 cut(s) 215, 299
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 6 cut(s) 9, 139, 175, 208, 328, 343
BseDI CCNNGG 6 cut(s) 9, 139, 175, 208, 328, 343
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 9 cut(s) 183, 213, 243, 264, 285, 315, 333, 348, 351
BshFI GGCC 4 cut(s) 138, 174, 207, 342
BsiSI CCGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 35, 58
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 4 cut(s) 138, 174, 207, 342
Bso31I GGTCTC 1 cut(s) 35
BspACI CCGC 2 cut(s) 69, 132
BspANI GGCC 4 cut(s) 138, 174, 207, 342
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 35
BssECI CCNNGG 6 cut(s) 9, 139, 175, 208, 328, 343
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 37, 369
BstDSI CCRYGG 5 cut(s) 139, 175, 208, 328, 343
BstMAI GTCTC 2 cut(s) 35, 58
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 182
BsuI GTATCC 2 cut(s) 215, 299
BsuRI GGCC 4 cut(s) 138, 174, 207, 342
BtgI CCRYGG 5 cut(s) 139, 175, 208, 328, 343
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 3 cut(s) 85, 149, 182
CviJI RGCY 9 cut(s) 5, 14, 94, 138, 174, 207, 342, 349, 373
CviKI_1 RGCY 9 cut(s) 5, 14, 94, 138, 174, 207, 342, 349, 373
DdeI CTNAG 2 cut(s) 37, 369
DrdI GACNNNNNNGTC 1 cut(s) 153
DseDI GACNNNNNNGTC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 3 cut(s) 88, 152, 185
FaiI YATR 5 cut(s) 86, 129, 150, 183, 246
FatI CATG 3 cut(s) 84, 148, 181
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 4 cut(s) 138, 174, 207, 342
HapII CCGG 1 cut(s) 374
Hin1II CATG 3 cut(s) 88, 152, 185
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 58, 366
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 37, 369
Hsp92II CATG 3 cut(s) 88, 152, 185
LpnPI CCDG 3 cut(s) 108, 132, 372
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 2 cut(s) 25, 35
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 138
MseI TTAA 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 375
NlaIII CATG 3 cut(s) 88, 152, 185
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 351
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 375
SetI ASST 9 cut(s) 31, 121, 127, 235, 256, 277, 295, 316, 361
SmiMI CAYNNNNRTG 1 cut(s) 180
SsiI CCGC 2 cut(s) 69, 132
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 112
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.