MD09G1118600.v1.1

Glycine-rich protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001806
Physical Location & Seq
Forward (+)
9118613 .. 9119509
897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1118600.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGTTTCCAAGACTTTCATTTACTTTGGTCTTTTGCTTGCCATTGTCCTTCTCATTTCCTCTGAAGTGGCCGCAAATGCTGCGGAGACTACTACAAATCCCAATGGTGTAGGTGACGCCAAGTATGGTGGCGGGTACCAAGGAGATCCTGGGCGAGGTGGGTATGGTGGCAACCCTGGTCGTGGCGGATATGGCGGTAACCCTGGTCGTGGCGGAAATGGAGGAGGAGGCCGTGGAGGGCGTTGCTACTATGGTTGTTGCAGATGGAGTTACAATGGAAGAGAGTGCCTAAGGTGCTGCAATCATGCTGGTCAGGCTGTTGATGCACAACCTCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

114

Amino Acids

11.52

Weight (kDa)

8.82

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 81 1.7e-10 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AciI CCGC 6 cut(s) 72, 83, 132, 186, 195, 213
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 155, 182, 209
AjnI CCWGG 3 cut(s) 148, 175, 202
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 69, 229
ApeKI GCWGC 2 cut(s) 80, 297
Asp718I GGTACC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 67, 284
BccI CCATC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 3 cut(s) 150, 177, 204
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 340
BisI GCNGC 3 cut(s) 72, 81, 298
BlsI GCNGC 3 cut(s) 73, 82, 299
Bme1390I CCNGG 3 cut(s) 150, 177, 204
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 3 cut(s) 150, 177, 204
BmsI GCATC 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 5 cut(s) 139, 149, 175, 202, 232
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 182, 209
Bse21I CCTNAGG 1 cut(s) 290
BseBI CCWGG 3 cut(s) 150, 177, 204
BseDI CCNNGG 5 cut(s) 139, 149, 175, 202, 232
BseLI CCNNNNNNNGG 3 cut(s) 155, 182, 209
BseRI GAGGAG 2 cut(s) 237, 240
BseXI GCAGC 2 cut(s) 67, 284
BshFI GGCC 2 cut(s) 71, 231
BshNI GGYRCC 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 155, 182, 209
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 71, 231
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 6 cut(s) 72, 83, 132, 186, 195, 213
BspANI GGCC 2 cut(s) 71, 231
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 135
BssECI CCNNGG 5 cut(s) 139, 149, 175, 202, 232
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 3 cut(s) 150, 177, 204
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 153
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 6 cut(s) 77, 80, 192, 294, 314, 323
BstNI CCWGG 3 cut(s) 150, 177, 204
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 3 cut(s) 148, 175, 202
BstV1I GCAGC 2 cut(s) 67, 284
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 2 cut(s) 71, 231
BtgI CCRYGG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 39
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 1 cut(s) 305
CviJI RGCY 3 cut(s) 71, 231, 317
CviKI_1 RGCY 3 cut(s) 71, 231, 317
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 290
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 2 cut(s) 201, 228
Eco130I CCWWGG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 3 cut(s) 148, 175, 202
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 308
FaiI YATR 5 cut(s) 126, 165, 192, 252, 306
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 72, 81, 298
Fsp4HI GCNGC 3 cut(s) 72, 81, 298
FspBI CTAG 1 cut(s) 340
GluI GCNGC 3 cut(s) 72, 81, 298
HaeIII GGCC 2 cut(s) 71, 231
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 308
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 261, 300, 326
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 80, 192, 294, 314, 323
HpyF3I CTNAG 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 308
KpnI GGTACC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 8 cut(s) 135, 162, 162, 189, 189, 216, 294, 299
Lsp1109I GCAGC 2 cut(s) 67, 284
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 340
MaeIII GTNAC 3 cut(s) 113, 197, 269
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 291
MflI RGATCY 1 cut(s) 145
MnlI CCTC 7 cut(s) 70, 149, 215, 218, 221, 230, 342
MspR9I CCNGG 3 cut(s) 150, 177, 204
MvaI CCWGG 3 cut(s) 150, 177, 204
MwoI GCNNNNNNNGC 6 cut(s) 77, 80, 192, 294, 314, 323
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 73, 82, 299
Psp6I CCWGG 3 cut(s) 148, 175, 202
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 3 cut(s) 148, 175, 202
PspN4I GGNNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 3 cut(s) 72, 81, 298
Sau3AI GATC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 150, 177, 204
SetI ASST 4 cut(s) 115, 160, 296, 334
SfaNI GCATC 1 cut(s) 313
SsiI CCGC 6 cut(s) 72, 83, 132, 186, 195, 213
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 3 cut(s) 148, 175, 202
StyI CCWWGG 1 cut(s) 139
TauI GCSGC 1 cut(s) 74
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 80, 297
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 7
XagI CCTNNNNNAGG 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.