Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

2025991 .. 2027283

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05520.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTTCCAAGGCTTTGGTTCTGTTGGGTCTCTTTGCTGTTCTTCTCGTCGTCTCAGAAGTAGCCGCGGCATCTTCTGCCACAGTGAATTCAGAGAGTAAGGAAACTGTGAAACCTGATCAACGTGGCTACGGTGACAATGGAGGAAATTACAATAACGGAGGAGGTTACCAGGGAGGAGGGGGTAATTACCAAGGAGGAGGAGGTAATTACCAAGGAGGAGGAGGTAATTACCAAGGAGGAGGAGGAAGATACCAAGGAGGAGGAGGACGGTACCAAGGAGGAGGAGGACGATACCAAGGAGGCGGTGGGCGACAAGGAGGAGGGGGAAGTGGGGGAAGTTACTGCCGCCACGGCTGCTGCTACAGAGGTTACAACGGCTGCTCAAGATGCTGCTCGTATGCCGGAGAAGCTGTTCAGACTCAGCCCGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0006950 GO:0007275 GO:0008150 GO:0008361 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0014070 GO:0016043 GO:0016049 GO:0022622 GO:0032501 GO:0032502 GO:0032535 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042493 GO:0046677 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

145

Amino Acids

14.29

Weight (kDa)

8.93

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRP	PF07172	1 - 81	8.6e-23	Glycine rich protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	66, 68, 306, 349
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	171
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	35, 58
ApeKI	GCWGC	4 cut(s)	357, 360, 381, 393
ApoI	RAATTY	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	344, 347, 368, 380
BceAI	ACGGC	2 cut(s)	370, 394
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	35, 58
BfmI	CTRYAG	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	7 cut(s)	66, 69, 349, 358, 361, 382, 394
BlsI	GCNGC	7 cut(s)	67, 70, 350, 359, 362, 383, 395
Bme1390I	CCNGG	2 cut(s)	173, 429
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	173, 429
BmsI	GCATC	2 cut(s)	80, 380
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
BseBI	CCWGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	69, 437
BseXI	GCAGC	4 cut(s)	344, 347, 368, 380
Bsh1236I	CGCG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	405, 429
BsmAI	GTCTC	2 cut(s)	35, 58
BsmBI	CGTCTC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	4 cut(s)	66, 68, 306, 349
BspCNI	CTCAG	2 cut(s)	68, 436
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	35
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	7 cut(s)	9, 193, 214, 235, 256, 277, 298
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	4 cut(s)	85, 109, 134, 273
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	55, 423
BstDSI	CCRYGG	2 cut(s)	66, 352
BstEII	GGTNACC	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	2 cut(s)	35, 58
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 77, 354, 357, 390, 410
BstNI	CCWGG	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	171, 427
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	4 cut(s)	344, 347, 368, 380
BstXI	CCANNNNNNTGG	1 cut(s)	16
BtgI	CCRYGG	2 cut(s)	66, 352
BtsIMutI	CAGTG	1 cut(s)	90
Cfr42I	CCGCGG	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	8 cut(s)	5, 14, 65, 129, 357, 381, 413, 427
CviKI_1	RGCY	8 cut(s)	5, 14, 65, 129, 357, 381, 413, 427
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	55, 423
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco130I	CCWWGG	7 cut(s)	9, 193, 214, 235, 256, 277, 298
Eco31I	GGTCTC	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	7 cut(s)	9, 193, 214, 235, 256, 277, 298
ErhI	CCWWGG	7 cut(s)	9, 193, 214, 235, 256, 277, 298
Esp3I	CGTCTC	1 cut(s)	58
FaiI	YATR	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	7 cut(s)	66, 69, 349, 358, 361, 382, 394
Fsp4HI	GCNGC	7 cut(s)	66, 69, 349, 358, 361, 382, 394
GluI	GCNGC	7 cut(s)	66, 69, 349, 358, 361, 382, 394
HapII	CCGG	2 cut(s)	405, 429
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	405, 429
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	58, 94, 420
Hpy188III	TCNNGA	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	4 cut(s)	85, 109, 134, 273
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 77, 354, 357, 390, 410
HpyF3I	CTNAG	2 cut(s)	55, 423
HpySE526I	ACGT	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	118
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	129, 158, 185, 418
Lsp1109I	GCAGC	4 cut(s)	344, 347, 368, 380
LweI	GCATC	2 cut(s)	80, 380
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	5 cut(s)	134, 167, 341, 371, 431
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	35, 66, 261
MluCI	AATT	5 cut(s)	88, 148, 187, 208, 229
MlyI	GAGTC	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	405, 429
MspR9I	CCNGG	2 cut(s)	173, 429
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	6 cut(s)	11, 77, 354, 357, 390, 410
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	134, 431
PdmI	GAANNNNTTC	1 cut(s)	414
PkrI	GCNGC	7 cut(s)	67, 70, 350, 359, 362, 383, 395
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	69
SatI	GCNGC	7 cut(s)	66, 69, 349, 358, 361, 382, 394
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	173, 429
SetI	ASST	7 cut(s)	118, 127, 169, 208, 229, 373, 415
SfaNI	GCATC	2 cut(s)	80, 380
SfcI	CTRYAG	1 cut(s)	364
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	88, 148, 187, 208, 229
SsiI	CCGC	4 cut(s)	66, 68, 306, 349
StyD4I	CCNGG	2 cut(s)	171, 427
StyI	CCWWGG	7 cut(s)	9, 193, 214, 235, 256, 277, 298
TaaI	ACNGT	4 cut(s)	85, 109, 134, 273
TaiI	ACGT	1 cut(s)	127
TasI	AATT	5 cut(s)	88, 148, 187, 208, 229
TauI	GCSGC	3 cut(s)	68, 71, 351
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	134, 431
TseI	GCWGC	4 cut(s)	357, 360, 381, 393
Tsp45I	GTSAC	2 cut(s)	134, 431
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.