AT2G05510

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001806
Physical Location & Seq
Forward (+)
2015624 .. 2016772
1149 bp
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UTR
Exon/CDS
Intron
AT2G05510.3

Sequence Viewer

Length: 384 bp
ATGGCATCCAAGGCTTTGATTCTGTTGGGTCTCTTCGCAATTCTTCTGGTGGTCTCCGAAGTTTCTGCCGCAAGACAGTCGGGCATGGTGAAGCCAGAGAGTGAGGCAACTGTGCAACCTGAAGGTTATCACGGAGGACATGGTGGTCACGGAGGGGGAGGCCACTACGGAGGAGGAGGCCACGGGCATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGGAGGACATGGAGGACACTACGGAGGAGGAGGAGGACACTACGGAGGAGGAGGAGGCCACGGTGGTGGTGGACACTACGGAGGTGGAGGACACCATGGAGGAGGAGGCCACGGGCTTAACGAACCTGTTCAGACGAAACCGGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

127

Amino Acids

11.82

Weight (kDa)

6.75

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 79 2.6e-21 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 144
AciI CCGC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 35, 58
AoxI GGCC 5 cut(s) 160, 178, 211, 289, 340
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 100
BcgI CGANNNNNNTGC 4 cut(s) 47, 60, 81, 94
BciVI GTATCC 1 cut(s) 221
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 35, 58
BfuI GTATCC 1 cut(s) 221
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 375
BsaI GGTCTC 2 cut(s) 35, 58
BsaJI CCNNGG 6 cut(s) 9, 181, 214, 292, 328, 343
BseDI CCNNGG 6 cut(s) 9, 181, 214, 292, 328, 343
BseGI GGATG 1 cut(s) 5
BshFI GGCC 5 cut(s) 162, 180, 213, 291, 342
BsiSI CCGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 35, 58
BsnI GGCC 5 cut(s) 162, 180, 213, 291, 342
Bso31I GGTCTC 2 cut(s) 35, 58
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 1 cut(s) 69
BspANI GGCC 5 cut(s) 162, 180, 213, 291, 342
BspLI GGNNCC 1 cut(s) 212
BspTNI GGTCTC 2 cut(s) 35, 58
BssECI CCNNGG 6 cut(s) 9, 181, 214, 292, 328, 343
BssT1I CCWWGG 2 cut(s) 9, 328
Bst4CI ACNGT 3 cut(s) 78, 112, 296
Bst6I CTCTTC 1 cut(s) 38
BstDSI CCRYGG 5 cut(s) 181, 214, 292, 328, 343
BstF5I GGATG 1 cut(s) 5
BstMAI GTCTC 2 cut(s) 35, 58
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 373
BstXI CCANNNNNNTGG 2 cut(s) 188, 299
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 5 cut(s) 162, 180, 213, 291, 342
BtgI CCRYGG 5 cut(s) 181, 214, 292, 328, 343
BtsCI GGATG 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 211
CviAII CATG 5 cut(s) 85, 140, 188, 242, 329
CviJI RGCY 8 cut(s) 14, 94, 162, 180, 213, 291, 342, 349
CviKI_1 RGCY 8 cut(s) 14, 94, 162, 180, 213, 291, 342, 349
DrdI GACNNNNNNGTC 1 cut(s) 144
DseDI GACNNNNNNGTC 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 9, 328
Eco31I GGTCTC 2 cut(s) 35, 58
Eco57I CTGAAG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 9, 328
ErhI CCWWGG 2 cut(s) 9, 328
FaeI CATG 5 cut(s) 88, 143, 191, 245, 332
FaiI YATR 5 cut(s) 86, 141, 189, 243, 330
FatI CATG 5 cut(s) 84, 139, 187, 241, 328
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 5 cut(s) 162, 180, 213, 291, 342
HapII CCGG 1 cut(s) 374
Hin1II CATG 5 cut(s) 88, 143, 191, 245, 332
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 58, 366
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 78, 112, 296
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 88, 143, 191, 245, 332
LpnPI CCDG 4 cut(s) 32, 108, 132, 372
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 2 cut(s) 25, 35
MluCI AATT 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 351, 382
MslI CAYNNNNRTG 2 cut(s) 186, 297
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 375
NcoI CCATGG 1 cut(s) 328
NlaIII CATG 5 cut(s) 88, 143, 191, 245, 332
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 186, 297
SaqAI TTAA 2 cut(s) 351, 382
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 375
SetI ASST 4 cut(s) 121, 127, 319, 361
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 186, 297
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 2 cut(s) 9, 328
TaaI ACNGT 3 cut(s) 78, 112, 296
TasI AATT 1 cut(s) 39
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 351, 382
Tru9I TTAA 2 cut(s) 351, 382
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.