Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Reverse (-)

13894810 .. 13895569

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTCCAACAAGGCATTTCTTCTCTTGGCCCTTTTAGTTGCTCTTGTTCTTGTAGTGGCCGCAAGCAGAGACCTCGCTCAGACTTCTACTGAGAAGGAAAATGGGGTGACCACTGAAAGTTCCAACGTTGGCGGCGTAGATGATGCCAAGTACGGTGGATATGGAGGCCCCGGAGGTGGATATCAAGGCGGTAATGGTGGATATGGAGGCAACGGCGGAGGGTACGAAGGTGGTAACGGTGGCCGTGGAGGCTACGGTGGTGGAAACCCTCGTTATGGAGGAGGAGGAGGAGGGTGTTACTATGGCTGCTGCAGGCGCAATAACTATGGAAGAGGGTGCAGAAGGTGCTGCTCTTATGCTGGTCAGGCTGTTGATAGTACAGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

130

Amino Acids

12.83

Weight (kDa)

8.21

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	63, 135, 192, 219
AclI	AACGTT	1 cut(s)	129
AcoI	YGGCCR	2 cut(s)	60, 244
AfaI	GTAC	3 cut(s)	155, 227, 382
AfiI	CCNNNNNNNGG	2 cut(s)	179, 278
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	4 cut(s)	30, 60, 169, 244
ApeKI	GCWGC	3 cut(s)	309, 312, 351
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	31, 170
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	121
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BbvI	GCAGC	3 cut(s)	296, 299, 338
BceAI	ACGGC	2 cut(s)	231, 232
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	5 cut(s)	63, 136, 310, 313, 352
BlsI	GCNGC	5 cut(s)	64, 137, 311, 314, 353
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	31, 170
BmiI	GGNNCC	2 cut(s)	7, 172
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	172, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 278
BseDI	CCNNGG	2 cut(s)	172, 247
BseLI	CCNNNNNNNGG	2 cut(s)	179, 278
BseMII	CTCAG	2 cut(s)	84, 95
BseRI	GAGGAG	4 cut(s)	297, 300, 303, 306
BseXI	GCAGC	3 cut(s)	296, 299, 338
BsgI	GTGCAG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	32, 62, 171, 246
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	179, 278
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	32, 62, 171, 246
Bso31I	GGTCTC	1 cut(s)	66
BspACI	CCGC	4 cut(s)	63, 135, 192, 219
BspANI	GGCC	4 cut(s)	32, 62, 171, 246
BspCNI	CTCAG	2 cut(s)	85, 94
BspLI	GGNNCC	2 cut(s)	7, 172
BspMAI	CTGCAG	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	172, 247
Bst4CI	ACNGT	4 cut(s)	158, 242, 260, 390
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	67, 317
BstDEI	CTNAG	2 cut(s)	81, 93
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 318, 348, 368
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	3 cut(s)	296, 299, 338
BsuRI	GGCC	4 cut(s)	32, 62, 171, 246
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	67, 317
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	31, 170
Csp6I	GTAC	3 cut(s)	154, 226, 381
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviJI	RGCY	7 cut(s)	32, 62, 171, 246, 255, 309, 371
CviKI_1	RGCY	7 cut(s)	32, 62, 171, 246, 255, 309, 371
CviQI	GTAC	3 cut(s)	154, 226, 381
DdeI	CTNAG	2 cut(s)	81, 93
EaeI	YGGCCR	2 cut(s)	60, 244
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	185
FaiI	YATR	6 cut(s)	165, 207, 279, 306, 330, 360
Fnu4HI	GCNGC	5 cut(s)	63, 136, 310, 313, 352
Fsp4HI	GCNGC	5 cut(s)	63, 136, 310, 313, 352
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	5 cut(s)	63, 136, 310, 313, 352
HaeIII	GGCC	4 cut(s)	32, 62, 171, 246
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	84
HpyAV	CCTTC	3 cut(s)	91, 224, 339
HpyCH4III	ACNGT	4 cut(s)	158, 242, 260, 390
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	315, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 318, 348, 368
HpyF3I	CTNAG	2 cut(s)	81, 93
HpySE526I	ACGT	1 cut(s)	129
HspAI	GCGC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	187, 301, 348, 353
Lsp1109I	GCAGC	3 cut(s)	296, 299, 338
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	109, 236, 299
MboII	GAAGA	2 cut(s)	14, 345
MmeI	TCCRAC	2 cut(s)	33, 150
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	252, 318, 348, 368
NciI	CCSGG	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	7, 172
NmuCI	GTSAC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PkrI	GCNGC	5 cut(s)	64, 137, 311, 314, 353
Psp1406I	AACGTT	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	7, 172
PspPI	GGNCC	2 cut(s)	31, 170
PstI	CTGCAG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	155, 227, 382
RsaNI	GTAC	3 cut(s)	154, 226, 381
SatI	GCNGC	5 cut(s)	63, 136, 310, 313, 352
Sau96I	GGNCC	2 cut(s)	31, 170
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	5 cut(s)	78, 132, 181, 235, 350
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	313
SsiI	CCGC	4 cut(s)	63, 135, 192, 219
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	158, 242, 260, 390
TaiI	ACGT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	2 cut(s)	65, 138
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	309, 312, 351
Tsp45I	GTSAC	1 cut(s)	109
TspRI	CASTG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.