Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000126.1

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

26875 .. 27308

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000126.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgagttccaacaaggcttttcttctcttggctcttttggttgctcttgttcttgtcgtggccgcaagcagagacctcgctcagacttctgctgagaaggaaaatggggtgaccactgcaagttccaacgttggcggcatagatgatgccaagtacggtggatatggaggccccggaggagggtaccaaggtggtaatggcagccgcggaggctatggtggaggaaaccctggttatggaggaggacgaggaggaggagggtgttactatggctgctgcaggcgccctaactacggaagagggtgcagaaggtgctgctcttatgctggtgaggcagttgatagtgcagaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

118

Amino Acids

11.69

Weight (kDa)

8.56

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	183, 282
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	63, 135, 205, 207
AclI	AACGTT	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	155, 185
AfiI	CCNNNNNNNGG	4 cut(s)	179, 180, 236, 293
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	2 cut(s)	60, 169
ApeKI	GCWGC	4 cut(s)	201, 273, 276, 315
Asp718I	GGTACC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	121, 341
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BanI	GGYRCC	2 cut(s)	183, 282
BbvI	GCAGC	4 cut(s)	213, 260, 263, 302
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	210
BisI	GCNGC	7 cut(s)	63, 136, 202, 205, 274, 277, 316
BlsI	GCNGC	7 cut(s)	64, 137, 203, 206, 275, 278, 317
Bme1390I	CCNGG	2 cut(s)	174, 231
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	3 cut(s)	172, 185, 284
BmrFI	CCNGG	2 cut(s)	174, 231
BmsI	GCATC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	172, 187, 205, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 180, 236, 293
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	4 cut(s)	172, 187, 205, 229
BseLI	CCNNNNNNNGG	4 cut(s)	179, 180, 236, 293
BseMII	CTCAG	2 cut(s)	84, 95
BseRI	GAGGAG	5 cut(s)	192, 255, 264, 267, 270
BseXI	GCAGC	4 cut(s)	213, 260, 263, 302
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	62, 171
BshNI	GGYRCC	2 cut(s)	183, 282
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	4 cut(s)	179, 180, 236, 293
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	62, 171
Bso31I	GGTCTC	1 cut(s)	66
BspACI	CCGC	4 cut(s)	63, 135, 205, 207
BspANI	GGCC	2 cut(s)	62, 171
BspCNI	CTCAG	2 cut(s)	85, 94
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	172, 185, 284
BspMAI	CTGCAG	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	183, 282
BspTNI	GGTCTC	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	172, 187, 205, 229
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	67, 281
BstDEI	CTNAG	2 cut(s)	81, 93
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 282, 312, 332
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	172, 229
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	213, 260, 263, 302
BsuRI	GGCC	2 cut(s)	62, 171
BtgI	CCRYGG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	67, 281
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	154, 184
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviJI	RGCY	7 cut(s)	17, 32, 62, 171, 204, 213, 273
CviKI_1	RGCY	7 cut(s)	17, 32, 62, 171, 204, 213, 273
CviQI	GTAC	2 cut(s)	154, 184
DdeI	CTNAG	2 cut(s)	81, 93
DinI	GGCGCC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	187
FaiI	YATR	6 cut(s)	140, 165, 216, 237, 270, 324
Fnu4HI	GCNGC	7 cut(s)	63, 136, 202, 205, 274, 277, 316
Fsp4HI	GCNGC	7 cut(s)	63, 136, 202, 205, 274, 277, 316
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	7 cut(s)	63, 136, 202, 205, 274, 277, 316
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	62, 171
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	121, 341
Hpy188I	TCNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	91, 303
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	119, 279, 306, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 282, 312, 332
HpyF3I	CTNAG	2 cut(s)	81, 93
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	283
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
KpnI	GGTACC	1 cut(s)	187
KspI	CCGCGG	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	187, 216, 243, 265, 312
Lsp1109I	GCAGC	4 cut(s)	213, 260, 263, 302
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	109, 263
MboII	GAAGA	2 cut(s)	14, 309
Mly113I	GGCGCC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	33, 150
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	174, 231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	210, 282, 312, 332
NarI	GGCGCC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	174
NlaIV	GGNNCC	3 cut(s)	172, 185, 284
NmuCI	GTSAC	1 cut(s)	109
PkrI	GCNGC	7 cut(s)	64, 137, 203, 206, 275, 278, 317
PluTI	GGCGCC	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	172, 185, 284
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	155, 185
RsaNI	GTAC	2 cut(s)	154, 184
SacII	CCGCGG	1 cut(s)	208
SatI	GCNGC	7 cut(s)	63, 136, 202, 205, 274, 277, 316
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	174, 231
SetI	ASST	4 cut(s)	78, 132, 193, 314
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	277
SfoI	GGCGCC	1 cut(s)	284
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SsiI	CCGC	4 cut(s)	63, 135, 205, 207
SspDI	GGCGCC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	172, 229
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	132
TauI	GCSGC	3 cut(s)	65, 138, 207
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	201, 273, 276, 315
Tsp45I	GTSAC	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.