AT2G05590

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005395
Physical Location & Seq
Forward (+)
2067061 .. 2069255
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05590.2

Sequence Viewer

Length: 792 bp
ATGCATGCTCTCAAGGACAAAGTCTCACAAAAACTCTCTAATCTCTTCGCCGATTCTCCAAGCCAATCTGCTTCTCCTCGTTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGGCAAATCATTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAACGAGGAGGATTCTGAGTTATGTCCACCTCTACCCATTAGAACAGAGAGCTATGAGTGTATTGAGAATTGCAAATCTGCTAATGGGCAAGCTAAAGCTGGAACCTTTATCTCAATTGGTGAAGATAAGGATTGTGAGTTACGTGTTTCTGCGAAAGTAGAAGAAAGTGGTAATGATTACTTTGATGGGGTGAAGAAGATGAGGGAATTAACAGAGAGCTCTGTGTTTATTACTGCTAACTTGTTTGAATTCTTGCATGCGAGTCTTCCTAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACGTTGAAACATGGTATATCACTTCGTACGCTTTTGCGAAGAAGTGGAGAGCTTCCTGGTCCTTGTTTACTGGTTGCTGGAGACAAACAAGGTGCAGTGTTTGGAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACTATGTTTAGACGAAGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

263

Amino Acids

28.96

Weight (kDa)

6.82

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 129 - 295 6.7e-39 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 701
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 3 cut(s) 115, 422, 734
AfaI GTAC 3 cut(s) 484, 511, 640
AfiI CCNNNNNNNGG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 316
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 4 cut(s) 115, 120, 422, 490
AjnI CCWGG 1 cut(s) 538
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 6 cut(s) 225, 266, 272, 393, 535, 590
AluI AGCT 6 cut(s) 225, 266, 272, 393, 535, 590
Alw21I GWGCWC 2 cut(s) 395, 592
Alw26I GTCTC 2 cut(s) 28, 558
AlwI GGATC 1 cut(s) 476
ApoI RAATTY 3 cut(s) 115, 422, 734
AsiGI ACCGGT 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 305, 376, 686
AvaII GGWCC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 2 cut(s) 395, 592
BbsI GAAGAC 2 cut(s) 132, 431
Bbv12I GWGCWC 2 cut(s) 395, 592
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 28, 558
BfaI CTAG 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 540
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 277, 703
BmrFI CCNGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 132, 431
BpmI CTGGAG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 698
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 540
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 558
BseRI GAGGAG 2 cut(s) 66, 194
BsgI GTGCAG 1 cut(s) 597
BshNI GGYRCC 1 cut(s) 701
BshTI ACCGGT 1 cut(s) 698
BsiHKAI GWGCWC 2 cut(s) 395, 592
BsiSI CCGG 1 cut(s) 699
BsiWI CGTACG 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 28, 558
Bsp1286I GDGCHC 2 cut(s) 395, 592
Bsp143I GATC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 277, 703
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 701
BsrFI RCCGGY 1 cut(s) 698
BsrI ACTGG 1 cut(s) 558
BssAI RCCGGY 1 cut(s) 698
BssMI GATC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 6, 264, 432
BstDEI CTNAG 2 cut(s) 189, 621
BstF5I GGATG 1 cut(s) 464
BstKTI GATC 1 cut(s) 471
BstMAI GTCTC 2 cut(s) 28, 558
BstMBI GATC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 2 cut(s) 8, 434
BstSCI CCNGG 1 cut(s) 538
BstV2I GAAGAC 2 cut(s) 132, 431
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 2 cut(s) 585, 605
BtsIMutI CAGTG 2 cut(s) 585, 605
Cac8I GCNNGC 3 cut(s) 6, 264, 432
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 483, 510, 639
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 3 cut(s) 5, 431, 494
CviJI RGCY 9 cut(s) 63, 107, 225, 266, 272, 393, 535, 590, 645
CviKI_1 RGCY 9 cut(s) 63, 107, 225, 266, 272, 393, 535, 590, 645
CviQI GTAC 3 cut(s) 483, 510, 639
DdeI CTNAG 2 cut(s) 189, 621
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 2 cut(s) 393, 590
Eco24I GRGCYC 2 cut(s) 395, 592
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 2 cut(s) 393, 590
EcoICRI GAGCTC 2 cut(s) 393, 590
EcoRI GAATTC 2 cut(s) 115, 422
EcoRII CCWGG 1 cut(s) 538
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 395, 592
FaeI CATG 3 cut(s) 8, 434, 497
FatI CATG 3 cut(s) 4, 430, 493
FokI GGATG 1 cut(s) 471
FriOI GRGCYC 2 cut(s) 395, 592
FspBI CTAG 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 582
HapII CCGG 1 cut(s) 699
Hin1II CATG 3 cut(s) 8, 434, 497
HinfI GANTC 4 cut(s) 53, 95, 185, 436
HpaII CCGG 1 cut(s) 699
HphI GGTGA 3 cut(s) 305, 376, 686
Hpy166II GTNNAC 5 cut(s) 200, 551, 605, 660, 677
Hpy188I TCNGA 2 cut(s) 94, 190
Hpy8I GTNNAC 5 cut(s) 200, 551, 605, 660, 677
HpyCH4IV ACGT 2 cut(s) 316, 485
HpyCH4V TGCA 7 cut(s) 4, 246, 430, 462, 578, 610, 767
HpyF3I CTNAG 2 cut(s) 189, 621
HpySE526I ACGT 2 cut(s) 316, 485
Hsp92II CATG 3 cut(s) 8, 434, 497
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 587
LweI GCATC 1 cut(s) 449
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 316, 485
MaeIII GTNAC 1 cut(s) 312
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 8 cut(s) 37, 132, 308, 347, 379, 382, 431, 534
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 395, 592
MluCI AATT 6 cut(s) 115, 241, 288, 380, 422, 734
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 2 cut(s) 111, 576
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 383
MspI CCGG 1 cut(s) 699
MspR9I CCNGG 1 cut(s) 540
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 540
NdeII GATC 1 cut(s) 468
NlaIII CATG 3 cut(s) 8, 434, 497
NlaIV GGNNCC 2 cut(s) 277, 703
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 434
PaeI GCATGC 2 cut(s) 8, 434
PfeI GAWTC 3 cut(s) 53, 95, 185
Pfl23II CGTACG 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 698
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Ppu21I YACGTR 1 cut(s) 317
Psp124BI GAGCTC 2 cut(s) 395, 592
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspLI CGTACG 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 277, 703
PspPI GGNCC 1 cut(s) 542
PsuI RGATCY 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 3 cut(s) 484, 511, 640
RsaNI GTAC 3 cut(s) 483, 510, 639
SacI GAGCTC 2 cut(s) 395, 592
SaqAI TTAA 1 cut(s) 383
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 540
SduI GDGCHC 2 cut(s) 395, 592
SfaNI GCATC 1 cut(s) 449
SinI GGWCC 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 2 cut(s) 8, 434
Sse9I AATT 6 cut(s) 115, 241, 288, 380, 422, 734
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 2 cut(s) 395, 592
StyD4I CCNGG 1 cut(s) 538
TaiI ACGT 2 cut(s) 319, 488
TasI AATT 6 cut(s) 115, 241, 288, 380, 422, 734
TfiI GAWTC 3 cut(s) 53, 95, 185
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 2 cut(s) 585, 612
TspDTI ATGAA 2 cut(s) 743, 747
TspRI CASTG 2 cut(s) 585, 612
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 3 cut(s) 115, 422, 734
XceI RCATGY 2 cut(s) 8, 434
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.