Rh4BG057200

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005395
Physical Location & Seq
Reverse (-)
10195065 .. 10198851
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG057200.1

Sequence Viewer

Length: 693 bp
ATGTCCACATTCAAAGACAAAGTTTCCGAGAGGATCTCCCGTCTGTTTGGCGATTCACCCAACTCAGCCTCTGCTGTTCCTTCCCCAGATGAGGATGAAAATCCCCAGGCCAGGTCATATTCTAAAGGGGGTAAATCACTGTCTTCGTACTTTTCATCCATTATCCCATCTGTAGGCGGTGGTGGATCTAGATCATACGAGCACCAGCAATCAGTCCCACTTAGTAATGTGAACTTTGACTCCAAATATGAAACCTTGGATACATTTGAAGACTGTCATTCACCTGGTGAGAACAGGGAAACTGAAAATGATCGAGAAAACGATGATGACCATGCTTCTAGAGGGAGCACCAGTGAGTCTGAAGTGTTTGAAGAAGCAACTTTACAGCAAAGTTCAGAAAAGCAACTGTCCTATCTCATGGATGACTCTGTCTTTATCTCCTCAGACTTGCTTGAATTTTTGCTTTCTTCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGTTTTACTATACAGTACGGCAAAACATGGTATATCACTCCGTACACTAATTCGCAAGAGCGCTGAAGTTTCCGGTCCATGTCTGCTGATTGGTGGAGATACACAAGGTGCTGTGTTTGGTGGACTCCTAGAGGGCCCCTTGAAACCAACGGCAAAGAGAAAATATCAAGTAAACATGCTTTTAAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

230

Amino Acids

25.12

Weight (kDa)

4.85

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 141 - 223 1e-12 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 41, 193
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 381, 585
AdeI CACNNNGTG 2 cut(s) 287, 608
AfaI GTAC 3 cut(s) 149, 517, 544
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 3 cut(s) 91, 111, 173
AgsI TTSAA 5 cut(s) 13, 269, 371, 455, 643
AjnI CCWGG 3 cut(s) 105, 110, 283
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
Alw21I GWGCWC 2 cut(s) 204, 350
AlwI GGATC 2 cut(s) 41, 193
AlwNI CAGNNNCTG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 108, 634
ApaI GGGCCC 1 cut(s) 638
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 3 cut(s) 575, 634, 635
AsuHPI GGTGA 3 cut(s) 48, 273, 299
AvaII GGWCC 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 638
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 2 cut(s) 135, 276
Bbv12I GWGCWC 2 cut(s) 204, 350
BccI CCATC 1 cut(s) 175
BceAI ACGGC 2 cut(s) 534, 666
BciT130I CCWGG 3 cut(s) 107, 112, 285
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 3 cut(s) 189, 339, 629
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 564
BfuI GTATCC 1 cut(s) 253
Bme1390I CCNGG 3 cut(s) 107, 112, 285
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 575, 634, 635
BmiI GGNNCC 3 cut(s) 494, 636, 637
BmrFI CCNGG 3 cut(s) 107, 112, 285
BpiI GAAGAC 2 cut(s) 135, 276
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaBI GATNNNNATC 2 cut(s) 99, 190
BsaJI CCNNGG 2 cut(s) 105, 255
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 111, 173
Bse1I ACTGG 1 cut(s) 351
Bse8I GATNNNNATC 2 cut(s) 99, 190
BseBI CCWGG 3 cut(s) 107, 112, 285
BseDI CCNNGG 2 cut(s) 105, 255
BseGI GGATG 3 cut(s) 100, 155, 427
BseJI GATNNNNATC 2 cut(s) 99, 190
BseLI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BseMII CTCAG 2 cut(s) 78, 456
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 638
BshFI GGCC 2 cut(s) 110, 636
BshNI GGYRCC 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 204, 350
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 2 cut(s) 110, 636
Bsp120I GGGCCC 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 204, 350, 638
Bsp143I GATC 4 cut(s) 33, 185, 191, 310
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 110, 636
BspCNI CTCAG 2 cut(s) 77, 455
BspLI GGNNCC 3 cut(s) 494, 636, 637
BspPI GGATC 2 cut(s) 41, 193
BspT107I GGYRCC 1 cut(s) 492
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 105, 255
BssMI GATC 4 cut(s) 33, 185, 191, 310
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 107, 112, 285
Bst4CI ACNGT 4 cut(s) 141, 275, 408, 515
Bst6I CTCTTC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 64, 221, 442
BstF5I GGATG 3 cut(s) 100, 155, 427
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 4 cut(s) 36, 188, 194, 313
BstMBI GATC 4 cut(s) 33, 185, 191, 310
BstNI CCWGG 3 cut(s) 107, 112, 285
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 105, 110, 283
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 638
BstV2I GAAGAC 2 cut(s) 135, 276
BstX2I RGATCY 2 cut(s) 33, 185
BstYI RGATCY 2 cut(s) 33, 185
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 110, 636
BtsCI GGATG 3 cut(s) 100, 155, 427
BtsIMutI CAGTG 2 cut(s) 137, 358
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 3 cut(s) 575, 634, 635
CsiI ACCWGGT 1 cut(s) 283
Csp6I GTAC 3 cut(s) 148, 516, 543
CviAII CATG 5 cut(s) 332, 418, 527, 579, 676
CviJI RGCY 3 cut(s) 68, 110, 636
CviKI_1 RGCY 3 cut(s) 68, 110, 636
CviQI GTAC 3 cut(s) 148, 516, 543
DdeI CTNAG 3 cut(s) 64, 221, 442
DpnI GATC 4 cut(s) 35, 187, 193, 312
DpnII GATC 4 cut(s) 33, 185, 191, 310
DraIII CACNNNGTG 2 cut(s) 287, 608
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 575
Eco47III AGCGCT 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 381, 585
EcoO109I RGGNCCY 2 cut(s) 634, 635
EcoRII CCWGG 3 cut(s) 105, 110, 283
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 335, 421, 530, 582, 679
FaqI GGGAC 1 cut(s) 200
FatI CATG 5 cut(s) 331, 417, 526, 578, 675
FokI GGATG 3 cut(s) 107, 142, 434
FriOI GRGCYC 1 cut(s) 638
FspBI CTAG 3 cut(s) 189, 339, 629
GlaI GCGC 1 cut(s) 562
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 2 cut(s) 110, 636
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 563
Hin1II CATG 5 cut(s) 335, 421, 530, 582, 679
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HinfI GANTC 5 cut(s) 53, 239, 356, 425, 624
HpaII CCGG 1 cut(s) 573
HphI GGTGA 3 cut(s) 48, 273, 299
Hpy166II GTNNAC 5 cut(s) 6, 232, 545, 623, 673
Hpy188I TCNGA 4 cut(s) 28, 361, 397, 445
Hpy188III TCNNGA 3 cut(s) 189, 314, 339
Hpy8I GTNNAC 5 cut(s) 6, 232, 545, 623, 673
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 4 cut(s) 141, 275, 408, 515
HpyF3I CTNAG 3 cut(s) 64, 221, 442
Hsp92II CATG 5 cut(s) 335, 421, 530, 582, 679
HspAI GCGC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 33, 185, 191, 310
LmnI GCTCC 1 cut(s) 345
MabI ACCWGGT 1 cut(s) 283
MaeI CTAG 3 cut(s) 189, 339, 629
MalI GATC 4 cut(s) 35, 187, 193, 312
MboI GATC 4 cut(s) 33, 185, 191, 310
MboII GAAGA 5 cut(s) 135, 281, 383, 459, 464
MflI RGATCY 2 cut(s) 33, 185
MhlI GDGCHC 3 cut(s) 204, 350, 638
MluCI AATT 2 cut(s) 455, 549
MlyI GAGTC 4 cut(s) 233, 365, 419, 618
MnlI CCTC 6 cut(s) 24, 79, 85, 335, 451, 625
MseI TTAA 1 cut(s) 683
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 3 cut(s) 107, 112, 285
MvaI CCWGG 3 cut(s) 107, 112, 285
NdeII GATC 4 cut(s) 33, 185, 191, 310
NlaIII CATG 5 cut(s) 335, 421, 530, 582, 679
NlaIV GGNNCC 3 cut(s) 494, 636, 637
NspI RCATGY 1 cut(s) 679
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 428
PleI GAGTC 4 cut(s) 233, 364, 419, 618
PpsI GAGTC 4 cut(s) 233, 364, 419, 618
Psp6I CCWGG 3 cut(s) 105, 110, 283
PspGI CCWGG 3 cut(s) 105, 110, 283
PspN4I GGNNCC 3 cut(s) 494, 636, 637
PspOMI GGGCCC 1 cut(s) 634
PspPI GGNCC 3 cut(s) 575, 634, 635
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 33, 185
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 3 cut(s) 149, 517, 544
RsaNI GTAC 3 cut(s) 148, 516, 543
SaqAI TTAA 1 cut(s) 683
Sau3AI GATC 4 cut(s) 33, 185, 191, 310
Sau96I GGNCC 3 cut(s) 575, 634, 635
SchI GAGTC 4 cut(s) 233, 365, 419, 618
ScrFI CCNGG 3 cut(s) 107, 112, 285
SduI GDGCHC 3 cut(s) 204, 350, 638
SetI ASST 4 cut(s) 116, 257, 286, 610
SexAI ACCWGGT 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 575
Sse9I AATT 2 cut(s) 455, 549
SsiI CCGC 1 cut(s) 177
SspMI CTAG 3 cut(s) 189, 339, 629
StyD4I CCNGG 3 cut(s) 105, 110, 283
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 4 cut(s) 141, 275, 408, 515
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 455, 549
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 2 cut(s) 144, 358
TspDTI ATGAA 3 cut(s) 111, 144, 264
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 2 cut(s) 144, 358
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 455
XbaI TCTAGA 2 cut(s) 188, 338
XceI RCATGY 1 cut(s) 679
XspI CTAG 3 cut(s) 189, 339, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.