Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038779.1

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 817

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038779.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

acaaggtgctgtgtttggtggactcctagagggccccttgaaaccaacggcaaagagaaaatatcaaggaacgaaccaggcatttgttttcactaccagatatggtcagccaaggctatttagaccaactggagccaatcgttactattacatgtgtttgaatgatctgcttgcttttgggggtggcggtaactttgctttatgcttagatggagatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

73

Amino Acids

8.0

Weight (kDa)

9.39

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	41, 161
AjnI	CCWGG	1 cut(s)	76
AoxI	GGCC	1 cut(s)	32
ApaI	GGGCCC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	32, 33
BaeGI	GKGCMC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	36
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	27
BglII	AGATCT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	32, 33
BmiI	GGNNCC	3 cut(s)	34, 35, 134
BmrFI	CCNGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	34
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	164, 215
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	34, 35, 134
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	164, 215
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	167, 218
BstMBI	GATC	2 cut(s)	164, 215
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	32, 33
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	4 cut(s)	34, 110, 116, 135
CviKI_1	RGCY	4 cut(s)	34, 110, 116, 135
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	166, 217
DpnII	GATC	2 cut(s)	164, 215
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	36
EcoO109I	RGGNCCY	2 cut(s)	32, 33
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	155
FaiI	YATR	3 cut(s)	103, 153, 203
FatI	CATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	164, 215
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	63, 90, 110, 115
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	141, 189
MalI	GATC	2 cut(s)	166, 217
MboI	GATC	2 cut(s)	164, 215
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	164, 215
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	3 cut(s)	34, 35, 134
NspI	RCATGY	1 cut(s)	155
PciI	ACATGT	1 cut(s)	151
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	34, 35, 134
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	32, 33
PsuI	RGATCY	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	164, 215
Sau96I	GGNCC	2 cut(s)	32, 33
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	1 cut(s)	8
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	111
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.