Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010817.1

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Forward (+)

98927 .. 101703

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010817.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgtccacattcaaagacaaagtttccgagaggatctcccgtctgtttggcgattcacccaactcagcctctgctgttccttccccagacgaggatgaaaatccccaggccaggtcatattctaaagggggtaaatcactgtcttcgtacttttcatccattatcccatctgtaggcggtggtggatctagatcatacgagcaccagcaatcagtcccacttagtaatgtgaactttgactccaaatatgaaaccttggatacatttgaagactgtcattcacctggtgagaacagggaaactgaaaatgatcgagaaaacgatgatgaccatgcttctagagggagcaccagtgagtctgaagtgtttgaagaagcaactttacagcaaagttcagaaaagcaactgtcctatctcatggatgactctgtctttatctcctcagacttgcttgaatttttgctttcttctcttcctaatatagtgaaagggtgccaatgggttttactatacagtacggcaaaacatggtatatcactccgtacactaattcgcaagagcgctgaagtttccggtccatgtctgctgattggtggagatacacaaggtgctgtgtttggtggactcctagagggccccttgaaaccaacggcaaagagaaaatatcaaggaacgaaccaggcatttgttttcactaccagatatggtcagccaaggctatttagaccaactggagccaatcgttactattacatgtgtttgaatgatctgcttgcttttgggggtggcggtaactttgctttatgcttagatggagatctgttaagcggaactagcggaccttgtgaaacatttgggaatttatgcttggctcataaaccagagtttgaattgaagaatgttgagctttggggctttacacatgcatcacggtatctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

5.08

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AciI	CCGC	4 cut(s)	177, 789, 828, 837
AclWI	GGATC	2 cut(s)	41, 193
AcsI	RAATTY	2 cut(s)	455, 859
AcuI	CTGAAG	2 cut(s)	381, 585
AdeI	CACNNNGTG	2 cut(s)	287, 608
AfaI	GTAC	3 cut(s)	149, 517, 544
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	3 cut(s)	91, 111, 173
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	8 cut(s)	13, 269, 371, 455, 643, 763, 890, 895
AjnI	CCWGG	4 cut(s)	105, 110, 283, 678
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	907
AluI	AGCT	1 cut(s)	907
Alw21I	GWGCWC	2 cut(s)	204, 350
AlwI	GGATC	2 cut(s)	41, 193
AlwNI	CAGNNNCTG	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	562
AoxI	GGCC	2 cut(s)	108, 634
ApaI	GGGCCC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	455, 859
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	4 cut(s)	575, 634, 635, 839
AsuHPI	GGTGA	3 cut(s)	48, 273, 299
AvaII	GGWCC	2 cut(s)	575, 839
BaeGI	GKGCMC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	638
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbsI	GAAGAC	2 cut(s)	135, 276
Bbv12I	GWGCWC	2 cut(s)	204, 350
BccI	CCATC	2 cut(s)	175, 806
BceAI	ACGGC	2 cut(s)	534, 666
BciT130I	CCWGG	4 cut(s)	107, 112, 285, 680
BciVI	GTATCC	1 cut(s)	253
BfaI	CTAG	4 cut(s)	189, 339, 629, 834
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	817
Bme1390I	CCNGG	4 cut(s)	107, 112, 285, 680
Bme18I	GGWCC	2 cut(s)	575, 839
BmgT120I	GGNCC	4 cut(s)	575, 634, 635, 839
BmiI	GGNNCC	4 cut(s)	494, 636, 637, 736
BmrFI	CCNGG	4 cut(s)	107, 112, 285, 680
BmsI	GCATC	1 cut(s)	935
BpiI	GAAGAC	2 cut(s)	135, 276
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	753
BsaBI	GATNNNNATC	3 cut(s)	99, 190, 816
BsaJI	CCNNGG	3 cut(s)	105, 255, 713
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 337, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 111, 173
Bse1I	ACTGG	2 cut(s)	351, 736
Bse8I	GATNNNNATC	3 cut(s)	99, 190, 816
BseBI	CCWGG	4 cut(s)	107, 112, 285, 680
BseDI	CCNNGG	3 cut(s)	105, 255, 713
BseGI	GGATG	3 cut(s)	100, 155, 427
BseJI	GATNNNNATC	3 cut(s)	99, 190, 816
BseLI	CCNNNNNNNGG	3 cut(s)	91, 111, 173
BseMII	CTCAG	2 cut(s)	78, 456
BseNI	ACTGG	2 cut(s)	351, 736
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	638
BshFI	GGCC	2 cut(s)	110, 636
BshNI	GGYRCC	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	204, 350
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	91, 111, 173
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	110, 636
Bsp120I	GGGCCC	1 cut(s)	634
Bsp1286I	GDGCHC	3 cut(s)	204, 350, 638
Bsp143I	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
BspACI	CCGC	4 cut(s)	177, 789, 828, 837
BspANI	GGCC	2 cut(s)	110, 636
BspCNI	CTCAG	2 cut(s)	77, 455
BspLI	GGNNCC	4 cut(s)	494, 636, 637, 736
BspPI	GGATC	2 cut(s)	41, 193
BspT107I	GGYRCC	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	351, 736
BssECI	CCNNGG	3 cut(s)	105, 255, 713
BssMI	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
BssT1I	CCWWGG	2 cut(s)	255, 713
Bst2UI	CCWGG	4 cut(s)	107, 112, 285, 680
Bst4CI	ACNGT	5 cut(s)	141, 275, 408, 515, 933
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	4 cut(s)	64, 221, 442, 808
BstF5I	GGATG	3 cut(s)	100, 155, 427
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	6 cut(s)	36, 188, 194, 313, 769, 820
BstMBI	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	834
BstNI	CCWGG	4 cut(s)	107, 112, 285, 680
BstNSI	RCATGY	2 cut(s)	757, 926
BstSCI	CCNGG	4 cut(s)	105, 110, 283, 678
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	638
BstV2I	GAAGAC	2 cut(s)	135, 276
BstX2I	RGATCY	3 cut(s)	33, 185, 817
BstYI	RGATCY	3 cut(s)	33, 185, 817
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	110, 636
BtsCI	GGATG	3 cut(s)	100, 155, 427
BtsIMutI	CAGTG	2 cut(s)	137, 358
Cac8I	GCNNGC	1 cut(s)	774
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	575, 634, 635, 839
CsiI	ACCWGGT	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	148, 516, 543
CviAII	CATG	6 cut(s)	332, 418, 527, 579, 754, 923
CviJI	RGCY	9 cut(s)	68, 110, 636, 712, 718, 737, 872, 907, 915
CviKI_1	RGCY	9 cut(s)	68, 110, 636, 712, 718, 737, 872, 907, 915
CviQI	GTAC	3 cut(s)	148, 516, 543
DdeI	CTNAG	4 cut(s)	64, 221, 442, 808
DpnI	GATC	6 cut(s)	35, 187, 193, 312, 768, 819
DpnII	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
DraIII	CACNNNGTG	2 cut(s)	287, 608
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	255, 713
Eco24I	GRGCYC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	575, 839
Eco47III	AGCGCT	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	381, 585
EcoO109I	RGGNCCY	2 cut(s)	634, 635
EcoRII	CCWGG	4 cut(s)	105, 110, 283, 678
EcoT14I	CCWWGG	2 cut(s)	255, 713
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	2 cut(s)	255, 713
FaeI	CATG	6 cut(s)	335, 421, 530, 582, 757, 926
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	6 cut(s)	331, 417, 526, 578, 753, 922
FokI	GGATG	3 cut(s)	107, 142, 434
FriOI	GRGCYC	1 cut(s)	638
FspBI	CTAG	4 cut(s)	189, 339, 629, 834
GlaI	GCGC	1 cut(s)	562
GsuI	CTGGAG	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	110, 636
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	6 cut(s)	335, 421, 530, 582, 757, 926
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HinfI	GANTC	5 cut(s)	53, 239, 356, 425, 624
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	3 cut(s)	48, 273, 299
Hpy166II	GTNNAC	4 cut(s)	6, 232, 545, 623
Hpy188I	TCNGA	4 cut(s)	28, 361, 397, 445
Hpy188III	TCNNGA	4 cut(s)	189, 314, 339, 942
Hpy8I	GTNNAC	4 cut(s)	6, 232, 545, 623
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	5 cut(s)	141, 275, 408, 515, 933
HpyCH4V	TGCA	1 cut(s)	926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	834
HpyF3I	CTNAG	4 cut(s)	64, 221, 442, 808
Hsp92II	CATG	6 cut(s)	335, 421, 530, 582, 757, 926
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
LmnI	GCTCC	2 cut(s)	345, 734
LweI	GCATC	1 cut(s)	935
MabI	ACCWGGT	1 cut(s)	283
MaeI	CTAG	4 cut(s)	189, 339, 629, 834
MaeIII	GTNAC	2 cut(s)	743, 791
MalI	GATC	6 cut(s)	35, 187, 193, 312, 768, 819
MboI	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
MboII	GAAGA	6 cut(s)	135, 281, 383, 459, 464, 907
MflI	RGATCY	3 cut(s)	33, 185, 817
MhlI	GDGCHC	3 cut(s)	204, 350, 638
MluCI	AATT	4 cut(s)	455, 549, 859, 890
MlyI	GAGTC	4 cut(s)	233, 365, 419, 618
MnlI	CCTC	6 cut(s)	24, 79, 85, 335, 451, 625
Mph1103I	ATGCAT	1 cut(s)	928
MseI	TTAA	1 cut(s)	824
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	4 cut(s)	107, 112, 285, 680
MvaI	CCWGG	4 cut(s)	107, 112, 285, 680
MwoI	GCNNNNNNNGC	1 cut(s)	834
NdeII	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
NlaIII	CATG	6 cut(s)	335, 421, 530, 582, 757, 926
NlaIV	GGNNCC	4 cut(s)	494, 636, 637, 736
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	2 cut(s)	757, 926
PciI	ACATGT	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	428
PleI	GAGTC	4 cut(s)	233, 364, 419, 618
PpsI	GAGTC	4 cut(s)	233, 364, 419, 618
PscI	ACATGT	1 cut(s)	753
Psp6I	CCWGG	4 cut(s)	105, 110, 283, 678
PspGI	CCWGG	4 cut(s)	105, 110, 283, 678
PspN4I	GGNNCC	4 cut(s)	494, 636, 637, 736
PspOMI	GGGCCC	1 cut(s)	634
PspPI	GGNCC	4 cut(s)	575, 634, 635, 839
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	3 cut(s)	33, 185, 817
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	149, 517, 544
RsaNI	GTAC	3 cut(s)	148, 516, 543
SaqAI	TTAA	1 cut(s)	824
Sau3AI	GATC	6 cut(s)	33, 185, 191, 310, 766, 817
Sau96I	GGNCC	4 cut(s)	575, 634, 635, 839
SchI	GAGTC	4 cut(s)	233, 365, 419, 618
ScrFI	CCNGG	4 cut(s)	107, 112, 285, 680
SduI	GDGCHC	3 cut(s)	204, 350, 638
SetI	ASST	6 cut(s)	116, 257, 286, 610, 844, 909
SexAI	ACCWGGT	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	935
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	575, 839
Sse9I	AATT	4 cut(s)	455, 549, 859, 890
SsiI	CCGC	4 cut(s)	177, 789, 828, 837
SspMI	CTAG	4 cut(s)	189, 339, 629, 834
StyD4I	CCNGG	4 cut(s)	105, 110, 283, 678
StyI	CCWWGG	2 cut(s)	255, 713
TaaI	ACNGT	5 cut(s)	141, 275, 408, 515, 933
TaqI	TCGA	1 cut(s)	313
TasI	AATT	4 cut(s)	455, 549, 859, 890
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	2 cut(s)	144, 358
TspDTI	ATGAA	3 cut(s)	111, 144, 264
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	144, 358
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	575, 839
XapI	RAATTY	2 cut(s)	455, 859
XbaI	TCTAGA	2 cut(s)	188, 338
XceI	RCATGY	2 cut(s)	757, 926
XspI	CTAG	4 cut(s)	189, 339, 629, 834
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.