Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Forward (+)

44564005 .. 44564367

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGGGCAAGAAGCCTGAGTTCAAGTTATCCCAGAAGCGTGCAAGAATTACTGAGTCCAAGGGTCATTCGAATCGTCCGGAGGAAGAAGCAGACATGGAAGATCTTGAAGAGGGTGACGTCTATGCTGGCATCGAGGCCATAGATTACCTTGAAGATGGTATAGAGATAAATCTGCCGGAGAGATTGATGACTGCGGAAGAGATTAAGGGAATGAGAGAACAATACTGCATTCCAGACACTATCAAGTTGCGGCCGTTGAGAAAGGGTGAGTCCACGCATGATCCTCCCAAGCGTCACATAGCCATTCATCATGCGCAAATGAAGATGGGATTGTATCTTCCATTGGATCCCTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

120

Amino Acids

13.84

Weight (kDa)

5.38

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
Acc16I	TGCGCA	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	197, 253
AclWI	GGATC	3 cut(s)	278, 344, 357
AcoI	YGGCCR	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	25, 110, 155
AlwI	GGATC	3 cut(s)	278, 344, 357
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	2 cut(s)	138, 254
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	128, 281
AsuII	TTCGAA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	349
BccI	CCATC	2 cut(s)	152, 322
BceAI	ACGGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	9, 45
BseX3I	CGGCCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	140, 256
BsiEI	CGRYCG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	80, 179
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	140, 256
Bsp119I	TTCGAA	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	103, 283, 349
BspACI	CCGC	2 cut(s)	197, 253
BspANI	GGCC	2 cut(s)	140, 256
BspCNI	CTCAG	2 cut(s)	10, 46
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	278, 344, 357
BspT104I	TTCGAA	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	103, 283, 349
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	105, 195
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	42, 130
BstDEI	CTNAG	2 cut(s)	18, 54
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	106, 286, 352
BstMBI	GATC	3 cut(s)	103, 283, 349
BstMCI	CGRYCG	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	103, 349
BstYI	RGATCY	2 cut(s)	103, 349
BstZI	CGGCCG	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	140, 256
Cac8I	GCNNGC	2 cut(s)	42, 130
CfoI	GCGC	1 cut(s)	319
CseI	GACGC	1 cut(s)	284
CviAII	CATG	3 cut(s)	97, 281, 314
CviJI	RGCY	4 cut(s)	16, 140, 256, 305
CviKI_1	RGCY	4 cut(s)	16, 140, 256, 305
DdeI	CTNAG	2 cut(s)	18, 54
DpnI	GATC	3 cut(s)	105, 285, 351
DpnII	GATC	3 cut(s)	103, 283, 349
EaeI	YGGCCR	1 cut(s)	254
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	105, 195
EarI	CTCTTC	2 cut(s)	105, 195
EclXI	CGGCCG	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	100, 284, 317
FaiI	YATR	8 cut(s)	98, 126, 143, 164, 282, 302, 315, 359
FatI	CATG	3 cut(s)	96, 280, 313
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	140, 256
HapII	CCGG	2 cut(s)	80, 179
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	100, 284, 317
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	56, 73, 272
HpaII	CCGG	2 cut(s)	80, 179
HphI	GGTGA	2 cut(s)	128, 281
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	80, 107, 236
Hpy8I	GTNNAC	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	44, 231
HpyF3I	CTNAG	2 cut(s)	18, 54
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	100, 284, 317
HspAI	GCGC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	103, 283, 349
LpnPI	CCDG	6 cut(s)	30, 47, 93, 114, 192, 249
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	116, 296
MalI	GATC	3 cut(s)	105, 285, 351
MboI	GATC	3 cut(s)	103, 283, 349
MboII	GAAGA	7 cut(s)	98, 113, 122, 167, 212, 332, 337
MflI	RGATCY	2 cut(s)	103, 349
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	65, 281
MnlI	CCTC	4 cut(s)	76, 106, 130, 297
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	80, 179
Mva1269I	GAATGC	1 cut(s)	231
NdeII	GATC	3 cut(s)	103, 283, 349
NlaIII	CATG	3 cut(s)	100, 284, 317
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	116, 296
NsbI	TGCGCA	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	71
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	2 cut(s)	64, 280
PpsI	GAGTC	2 cut(s)	64, 280
PspN4I	GGNNCC	1 cut(s)	351
PsuI	RGATCY	2 cut(s)	103, 349
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	103, 283, 349
SchI	GAGTC	2 cut(s)	65, 281
SetI	ASST	2 cut(s)	123, 153
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	71
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	197, 253
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	71, 135
TasI	AATT	1 cut(s)	48
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	116, 296
Tsp45I	GTSAC	2 cut(s)	116, 296
TspDTI	ATGAA	2 cut(s)	299, 338
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.