Rh4CG063000

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005395
Physical Location & Seq
Reverse (-)
11896990 .. 11900738
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG063000.1

Sequence Viewer

Length: 909 bp
ATGTCCACATTCAAAGACAAAGTCTCCGAGAGGATCTCCCGTCTGTTTGGCGATTCCCCCAACTCAGCCTCTGCTGTTCCTTCCCCAGATGAGGATGAAAATCCCCAGGCCAGGTCATATTCTAAAGGGGGTAAATCACTGTCTTCGTACTTTTCATCCATTATCCCATCTGTAGGCGGTGGTGGATCTAGATCATACGAGCACCAGCAATCAGTCCCACTTAGTAATGTGAACTTTGACTCCAAATATGAAACCTTGGATACATTTGAAGACTGTCATTCACCTGGTGAGAACAGGGAAACTGAAAATGATCGAGAAAACGATGATGACCATGCTTCTAGAGGGAGCACCAGTGAGTCTGAAGTGTTTGAAGAAGCAACTTTACAGCAAAGTTCAGAAAAGCAACTGTCCTATCTCATGGATGACTCTGTCTTTATCTCCTCAGACTTGCTTGAATTTTTGCTTTCTTCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGTTTTACTATACAGTACTGCAAAACATGGTATATCACTCCGTACACTAATTCGCAAGAGCGCTGAAGTTTCCGGTCCATGTCTGCTGATTGGTGGAGATACACAAGGTGCAGTGTTTGGTGGACTCCTAGAGGGCCCCTTGAAACCAACGGCAAAGAGAAAATATCAAGGAACGAACCAGGCATTTGTTTTCACTACCAGATATGGTCAACCAAGGCTATTTAGACCAACTGGTGAGCCCTTTATCCTATTTACTTGCATATTCAAGTTCTTAAGAATACTTGGAAATGTTGTTATGATTGTTGATTGGTCAAGAGACAAGATAACTGGTATGTACTACATACCAAGACCACTGGCACTTGGGGTGCATTTTGGAGTTAGAGATGCTAACTGGTTCCTCTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

302

Amino Acids

33.58

Weight (kDa)

5.49

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 141 - 247 7.5e-17 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 41, 193
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 381, 585
AdeI CACNNNGTG 2 cut(s) 287, 608
AfaI GTAC 4 cut(s) 149, 517, 544, 836
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 3 cut(s) 91, 111, 173
AflII CTTAAG 1 cut(s) 772
AgsI TTSAA 6 cut(s) 13, 269, 371, 455, 643, 766
AjnI CCWGG 4 cut(s) 105, 110, 283, 678
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
Alw21I GWGCWC 2 cut(s) 204, 350
Alw26I GTCTC 2 cut(s) 28, 810
AlwI GGATC 2 cut(s) 41, 193
AlwNI CAGNNNCTG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 108, 634
ApaI GGGCCC 1 cut(s) 638
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 3 cut(s) 575, 634, 635
AsuHPI GGTGA 3 cut(s) 273, 299, 746
AvaII GGWCC 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 2 cut(s) 638, 741
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 2 cut(s) 135, 276
Bbv12I GWGCWC 2 cut(s) 204, 350
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 4 cut(s) 107, 112, 285, 680
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 28, 810
BfaI CTAG 3 cut(s) 189, 339, 629
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 772
BfuI GTATCC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 4 cut(s) 107, 112, 285, 680
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 575, 634, 635
BmiI GGNNCC 4 cut(s) 494, 636, 637, 896
BmrFI CCNGG 4 cut(s) 107, 112, 285, 680
BmsI GCATC 1 cut(s) 874
BpiI GAAGAC 2 cut(s) 135, 276
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaBI GATNNNNATC 2 cut(s) 99, 190
BsaJI CCNNGG 3 cut(s) 105, 255, 713
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 224, 254, 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 111, 173
Bse1I ACTGG 5 cut(s) 351, 736, 832, 858, 896
Bse8I GATNNNNATC 2 cut(s) 99, 190
BseBI CCWGG 4 cut(s) 107, 112, 285, 680
BseDI CCNNGG 3 cut(s) 105, 255, 713
BseGI GGATG 3 cut(s) 100, 155, 427
BseJI GATNNNNATC 2 cut(s) 99, 190
BseLI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BseMII CTCAG 2 cut(s) 78, 456
BseNI ACTGG 5 cut(s) 351, 736, 832, 858, 896
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 630
BshFI GGCC 2 cut(s) 110, 636
BshNI GGYRCC 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 204, 350
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BsmAI GTCTC 2 cut(s) 28, 810
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 2 cut(s) 110, 636
Bsp120I GGGCCC 1 cut(s) 634
Bsp1286I GDGCHC 4 cut(s) 204, 350, 638, 741
Bsp143I GATC 4 cut(s) 33, 185, 191, 310
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 110, 636
BspCNI CTCAG 2 cut(s) 77, 455
BspLI GGNNCC 4 cut(s) 494, 636, 637, 896
BspPI GGATC 2 cut(s) 41, 193
BspT107I GGYRCC 1 cut(s) 492
BspTI CTTAAG 1 cut(s) 772
BsrI ACTGG 5 cut(s) 351, 736, 832, 858, 896
BssECI CCNNGG 3 cut(s) 105, 255, 713
BssMI GATC 4 cut(s) 33, 185, 191, 310
BssT1I CCWWGG 2 cut(s) 255, 713
Bst2UI CCWGG 4 cut(s) 107, 112, 285, 680
Bst4CI ACNGT 4 cut(s) 141, 275, 408, 515
Bst6I CTCTTC 1 cut(s) 477
BstAFI CTTAAG 1 cut(s) 772
BstDEI CTNAG 3 cut(s) 64, 221, 442
BstF5I GGATG 3 cut(s) 100, 155, 427
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 4 cut(s) 36, 188, 194, 313
BstMAI GTCTC 2 cut(s) 28, 810
BstMBI GATC 4 cut(s) 33, 185, 191, 310
BstNI CCWGG 4 cut(s) 107, 112, 285, 680
BstSCI CCNGG 4 cut(s) 105, 110, 283, 678
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 638
BstV2I GAAGAC 2 cut(s) 135, 276
BstX2I RGATCY 2 cut(s) 33, 185
BstYI RGATCY 2 cut(s) 33, 185
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 110, 636
BtsCI GGATG 3 cut(s) 100, 155, 427
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 4 cut(s) 137, 358, 618, 851
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 3 cut(s) 575, 634, 635
CsiI ACCWGGT 1 cut(s) 283
Csp6I GTAC 4 cut(s) 148, 516, 543, 835
CviAII CATG 4 cut(s) 332, 418, 527, 579
CviJI RGCY 5 cut(s) 68, 110, 636, 718, 739
CviKI_1 RGCY 5 cut(s) 68, 110, 636, 718, 739
CviQI GTAC 4 cut(s) 148, 516, 543, 835
DdeI CTNAG 3 cut(s) 64, 221, 442
DpnI GATC 4 cut(s) 35, 187, 193, 312
DpnII GATC 4 cut(s) 33, 185, 191, 310
DraIII CACNNNGTG 2 cut(s) 287, 608
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 255, 713
Eco24I GRGCYC 2 cut(s) 638, 741
Eco47I GGWCC 1 cut(s) 575
Eco47III AGCGCT 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 381, 585
EcoO109I RGGNCCY 2 cut(s) 634, 635
EcoRII CCWGG 4 cut(s) 105, 110, 283, 678
EcoT14I CCWWGG 2 cut(s) 255, 713
EcoT38I GRGCYC 2 cut(s) 638, 741
ErhI CCWWGG 2 cut(s) 255, 713
FaeI CATG 4 cut(s) 335, 421, 530, 582
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 331, 417, 526, 578
FokI GGATG 3 cut(s) 107, 142, 434
FriOI GRGCYC 2 cut(s) 638, 741
FspBI CTAG 3 cut(s) 189, 339, 629
GlaI GCGC 1 cut(s) 562
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 2 cut(s) 110, 636
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 563
Hin1II CATG 4 cut(s) 335, 421, 530, 582
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HinfI GANTC 5 cut(s) 53, 239, 356, 425, 624
HpaII CCGG 1 cut(s) 573
HphI GGTGA 3 cut(s) 273, 299, 746
Hpy166II GTNNAC 5 cut(s) 6, 232, 545, 623, 710
Hpy188I TCNGA 4 cut(s) 28, 361, 397, 445
Hpy188III TCNNGA 4 cut(s) 189, 314, 339, 813
Hpy8I GTNNAC 5 cut(s) 6, 232, 545, 623, 710
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 4 cut(s) 141, 275, 408, 515
HpyCH4V TGCA 4 cut(s) 521, 611, 759, 868
HpyF3I CTNAG 3 cut(s) 64, 221, 442
Hsp92II CATG 4 cut(s) 335, 421, 530, 582
HspAI GCGC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 33, 185, 191, 310
LmnI GCTCC 1 cut(s) 345
LweI GCATC 1 cut(s) 874
MabI ACCWGGT 1 cut(s) 283
MaeI CTAG 3 cut(s) 189, 339, 629
MalI GATC 4 cut(s) 35, 187, 193, 312
MboI GATC 4 cut(s) 33, 185, 191, 310
MboII GAAGA 5 cut(s) 135, 281, 383, 459, 464
MflI RGATCY 2 cut(s) 33, 185
MhlI GDGCHC 4 cut(s) 204, 350, 638, 741
MluCI AATT 2 cut(s) 455, 549
MlyI GAGTC 4 cut(s) 233, 365, 419, 618
MnlI CCTC 7 cut(s) 24, 79, 85, 335, 451, 625, 908
MseI TTAA 1 cut(s) 773
MspCI CTTAAG 1 cut(s) 772
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 4 cut(s) 107, 112, 285, 680
MvaI CCWGG 4 cut(s) 107, 112, 285, 680
NdeII GATC 4 cut(s) 33, 185, 191, 310
NlaIII CATG 4 cut(s) 335, 421, 530, 582
NlaIV GGNNCC 4 cut(s) 494, 636, 637, 896
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 2 cut(s) 20, 428
PleI GAGTC 4 cut(s) 233, 364, 419, 618
PpsI GAGTC 4 cut(s) 233, 364, 419, 618
Psp6I CCWGG 4 cut(s) 105, 110, 283, 678
PspGI CCWGG 4 cut(s) 105, 110, 283, 678
PspN4I GGNNCC 4 cut(s) 494, 636, 637, 896
PspOMI GGGCCC 1 cut(s) 634
PspPI GGNCC 3 cut(s) 575, 634, 635
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 33, 185
PsyI GACNNNGTC 2 cut(s) 20, 428
RsaI GTAC 4 cut(s) 149, 517, 544, 836
RsaNI GTAC 4 cut(s) 148, 516, 543, 835
SaqAI TTAA 1 cut(s) 773
Sau3AI GATC 4 cut(s) 33, 185, 191, 310
Sau96I GGNCC 3 cut(s) 575, 634, 635
ScaI AGTACT 1 cut(s) 517
SchI GAGTC 4 cut(s) 233, 365, 419, 618
ScrFI CCNGG 4 cut(s) 107, 112, 285, 680
SduI GDGCHC 4 cut(s) 204, 350, 638, 741
SetI ASST 4 cut(s) 116, 257, 286, 610
SexAI ACCWGGT 1 cut(s) 283
SfaNI GCATC 1 cut(s) 874
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 2 cut(s) 455, 549
SsiI CCGC 1 cut(s) 177
SspMI CTAG 3 cut(s) 189, 339, 629
StyD4I CCNGG 4 cut(s) 105, 110, 283, 678
StyI CCWWGG 2 cut(s) 255, 713
TaaI ACNGT 4 cut(s) 141, 275, 408, 515
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 455, 549
TatI WGTACW 2 cut(s) 515, 834
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 773
Tru9I TTAA 1 cut(s) 773
TscAI CASTG 4 cut(s) 144, 358, 618, 858
TspDTI ATGAA 3 cut(s) 111, 144, 264
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 4 cut(s) 144, 358, 618, 858
Tth111I GACNNNGTC 2 cut(s) 20, 428
Vha464I CTTAAG 1 cut(s) 772
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 455
XbaI TCTAGA 2 cut(s) 188, 338
XspI CTAG 3 cut(s) 189, 339, 629
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.