RLG00000009630

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005395
Physical Location & Seq
Forward (+)
55645987 .. 55648762
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009630

Sequence Viewer

Length: 945 bp
ATGTCCACATTCAAAGACAAAGTTTCCGACAGGATCTCCCGTCTGTTTGGCGATTCACCCAGCTCAGCCTCTGCAGTTGCTTCCCCAGATGAGGATGAAAATCCCCAGGCCAGGTCATATTCTAAAGGGAGTAAATCACTGTCTTCGTACTTTTCATCCATTATCCCATCTGTAGGTGGTGGTGGATCTAGATCATACATGCACCAGCAATCAGTCGCACTTAGTAATGTGAACTTTGACTCCAAATATGAAACCTTGGATACATTTGAAGACTGTCATTCTCCTGGTGAGAACAGGGAAACTGAAAATGATCGAGAAGACGATGATGATCATGCTTCTAGAGGGAGCACCAGTGAGTCTGAAGTGTTTGAAGAAGCAACTTTACAGCAAAGTTTAGAAAAGCAACTATCCTGCCTCTTGGATGACTCTGTCTTTATCTCCTCAGACTTGCTTCAATTTTTGCTTTCTTCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGTTTTACTATACAGTACGGCAAAACATGGTATATCACTCCGTACACTAATTCGCAAGAGCGCTGAAGTTTCCGGTCCATGTCTGCTGATTGGTGGAGATACACAAGGTGCTGTGTTTGGTGGACTCCTAGAGGGCCCCTTGAAACCAACGGCAAAGAGAAAATATCAAGGAACAAACCAGGCATTTGTTTTCACTACCATATATGGTCAACCAAGGCTATTTAGACCAACTGGAGCCAATCGTTACTATTACATGTGTTTGAATGATATGCTAGCGTTTGGGGGTGGCGGTAACTTTGCTTTATGCTTAGATGGAGATCTGTTAAGCGGAACCAGCGGACCTTGTGAAACATTTGGGAACTTATGCTTGGCTCATAAACCAGAGTTTGAATTGAAGAATGTTGAGCTTTGGGGCTTTACACATGCATCACGGTATCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

315

Amino Acids

34.27

Weight (kDa)

5.05

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 141 - 306 9.7e-37 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AciI CCGC 3 cut(s) 789, 828, 837
AclWI GGATC 2 cut(s) 41, 193
AcuI CTGAAG 2 cut(s) 381, 585
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 3 cut(s) 149, 517, 544
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 3 cut(s) 91, 111, 173
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 8 cut(s) 13, 269, 371, 455, 643, 763, 890, 895
AjnI CCWGG 4 cut(s) 105, 110, 283, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 63, 907
AluI AGCT 2 cut(s) 63, 907
Alw21I GWGCWC 1 cut(s) 350
AlwI GGATC 2 cut(s) 41, 193
AlwNI CAGNNNCTG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 108, 634
ApaI GGGCCC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 4 cut(s) 575, 634, 635, 839
AsuHPI GGTGA 2 cut(s) 48, 299
AsuNHI GCTAGC 1 cut(s) 772
AvaII GGWCC 2 cut(s) 575, 839
BaeGI GKGCMC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 638
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 3 cut(s) 135, 276, 324
Bbv12I GWGCWC 1 cut(s) 350
BccI CCATC 2 cut(s) 175, 806
BceAI ACGGC 2 cut(s) 534, 666
BciT130I CCWGG 4 cut(s) 107, 112, 285, 680
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 328
BfaI CTAG 4 cut(s) 189, 339, 629, 773
BfmI CTRYAG 2 cut(s) 72, 171
BfoI RGCGCY 1 cut(s) 564
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 1 cut(s) 817
BlpI GCTNAGC 1 cut(s) 64
Bme1390I CCNGG 4 cut(s) 107, 112, 285, 680
Bme18I GGWCC 2 cut(s) 575, 839
BmgT120I GGNCC 4 cut(s) 575, 634, 635, 839
BmiI GGNNCC 5 cut(s) 494, 636, 637, 736, 832
BmrFI CCNGG 4 cut(s) 107, 112, 285, 680
BmsI GCATC 1 cut(s) 935
BmtI GCTAGC 1 cut(s) 776
BpiI GAAGAC 3 cut(s) 135, 276, 324
BpmI CTGGAG 1 cut(s) 753
Bpu1102I GCTNAGC 1 cut(s) 64
BsaBI GATNNNNATC 4 cut(s) 99, 190, 327, 816
BsaJI CCNNGG 3 cut(s) 105, 255, 713
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 224, 254, 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 111, 173
Bse1I ACTGG 2 cut(s) 351, 736
Bse8I GATNNNNATC 4 cut(s) 99, 190, 327, 816
BseBI CCWGG 4 cut(s) 107, 112, 285, 680
BseDI CCNNGG 3 cut(s) 105, 255, 713
BseGI GGATG 3 cut(s) 100, 155, 427
BseJI GATNNNNATC 4 cut(s) 99, 190, 327, 816
BseLI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BseMII CTCAG 2 cut(s) 78, 456
BseNI ACTGG 2 cut(s) 351, 736
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 638
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 110, 636
BshNI GGYRCC 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 91, 111, 173
BsnI GGCC 2 cut(s) 110, 636
Bsp120I GGGCCC 1 cut(s) 634
Bsp1286I GDGCHC 2 cut(s) 350, 638
Bsp143I GATC 6 cut(s) 33, 185, 191, 310, 328, 817
Bsp1720I GCTNAGC 1 cut(s) 64
BspACI CCGC 3 cut(s) 789, 828, 837
BspANI GGCC 2 cut(s) 110, 636
BspCNI CTCAG 2 cut(s) 77, 455
BspLI GGNNCC 5 cut(s) 494, 636, 637, 736, 832
BspMAI CTGCAG 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 2 cut(s) 41, 193
BspT107I GGYRCC 1 cut(s) 492
BsrI ACTGG 2 cut(s) 351, 736
BssECI CCNNGG 3 cut(s) 105, 255, 713
BssMI GATC 6 cut(s) 33, 185, 191, 310, 328, 817
BssT1I CCWWGG 2 cut(s) 255, 713
Bst2UI CCWGG 4 cut(s) 107, 112, 285, 680
Bst4CI ACNGT 4 cut(s) 141, 275, 515, 933
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 4 cut(s) 64, 221, 442, 808
BstF5I GGATG 3 cut(s) 100, 155, 427
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 6 cut(s) 36, 188, 194, 313, 331, 820
BstMBI GATC 6 cut(s) 33, 185, 191, 310, 328, 817
BstMWI GCNNNNNNNGC 1 cut(s) 834
BstNI CCWGG 4 cut(s) 107, 112, 285, 680
BstNSI RCATGY 3 cut(s) 202, 757, 926
BstSCI CCNGG 4 cut(s) 105, 110, 283, 678
BstSFI CTRYAG 2 cut(s) 72, 171
BstSLI GKGCMC 1 cut(s) 638
BstV2I GAAGAC 3 cut(s) 135, 276, 324
BstX2I RGATCY 3 cut(s) 33, 185, 817
BstYI RGATCY 3 cut(s) 33, 185, 817
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 110, 636
BtsCI GGATG 3 cut(s) 100, 155, 427
BtsIMutI CAGTG 2 cut(s) 137, 358
Cac8I GCNNGC 1 cut(s) 774
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 4 cut(s) 575, 634, 635, 839
Csp6I GTAC 3 cut(s) 148, 516, 543
CviAII CATG 6 cut(s) 199, 332, 527, 579, 754, 923
CviJI RGCY 9 cut(s) 63, 68, 110, 636, 718, 737, 872, 907, 915
CviKI_1 RGCY 9 cut(s) 63, 68, 110, 636, 718, 737, 872, 907, 915
CviQI GTAC 3 cut(s) 148, 516, 543
DdeI CTNAG 4 cut(s) 64, 221, 442, 808
DpnI GATC 6 cut(s) 35, 187, 193, 312, 330, 819
DpnII GATC 6 cut(s) 33, 185, 191, 310, 328, 817
DraIII CACNNNGTG 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 255, 713
Eco24I GRGCYC 1 cut(s) 638
Eco47I GGWCC 2 cut(s) 575, 839
Eco47III AGCGCT 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 381, 585
EcoO109I RGGNCCY 2 cut(s) 634, 635
EcoRII CCWGG 4 cut(s) 105, 110, 283, 678
EcoT14I CCWWGG 2 cut(s) 255, 713
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 2 cut(s) 255, 713
FaeI CATG 6 cut(s) 202, 335, 530, 582, 757, 926
FatI CATG 6 cut(s) 198, 331, 526, 578, 753, 922
FbaI TGATCA 1 cut(s) 328
FokI GGATG 3 cut(s) 107, 142, 434
FriOI GRGCYC 1 cut(s) 638
FspBI CTAG 4 cut(s) 189, 339, 629, 773
GlaI GCGC 1 cut(s) 562
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 2 cut(s) 110, 636
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 563
Hin1II CATG 6 cut(s) 202, 335, 530, 582, 757, 926
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HinfI GANTC 5 cut(s) 53, 239, 356, 425, 624
HpaII CCGG 1 cut(s) 573
HphI GGTGA 2 cut(s) 48, 299
Hpy166II GTNNAC 5 cut(s) 6, 232, 545, 623, 710
Hpy188I TCNGA 3 cut(s) 28, 361, 445
Hpy188III TCNNGA 4 cut(s) 189, 314, 339, 942
Hpy8I GTNNAC 5 cut(s) 6, 232, 545, 623, 710
HpyCH4III ACNGT 4 cut(s) 141, 275, 515, 933
HpyCH4V TGCA 3 cut(s) 74, 202, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 834
HpyF3I CTNAG 4 cut(s) 64, 221, 442, 808
Hsp92II CATG 6 cut(s) 202, 335, 530, 582, 757, 926
HspAI GCGC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 6 cut(s) 33, 185, 191, 310, 328, 817
LmnI GCTCC 2 cut(s) 345, 734
LweI GCATC 1 cut(s) 935
MaeI CTAG 4 cut(s) 189, 339, 629, 773
MaeIII GTNAC 2 cut(s) 743, 791
MalI GATC 6 cut(s) 35, 187, 193, 312, 330, 819
MboI GATC 6 cut(s) 33, 185, 191, 310, 328, 817
MboII GAAGA 7 cut(s) 135, 281, 329, 383, 459, 464, 907
MflI RGATCY 3 cut(s) 33, 185, 817
MhlI GDGCHC 2 cut(s) 350, 638
MluCI AATT 3 cut(s) 455, 549, 890
MlyI GAGTC 4 cut(s) 233, 365, 419, 618
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 6 cut(s) 79, 85, 335, 425, 451, 625
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 1 cut(s) 824
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 4 cut(s) 107, 112, 285, 680
MvaI CCWGG 4 cut(s) 107, 112, 285, 680
MwoI GCNNNNNNNGC 1 cut(s) 834
NdeII GATC 6 cut(s) 33, 185, 191, 310, 328, 817
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 6 cut(s) 202, 335, 530, 582, 757, 926
NlaIV GGNNCC 5 cut(s) 494, 636, 637, 736, 832
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 3 cut(s) 202, 757, 926
PciI ACATGT 1 cut(s) 753
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 428
PleI GAGTC 4 cut(s) 233, 364, 419, 618
PpsI GAGTC 4 cut(s) 233, 364, 419, 618
PscI ACATGT 1 cut(s) 753
Psp6I CCWGG 4 cut(s) 105, 110, 283, 678
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 4 cut(s) 105, 110, 283, 678
PspN4I GGNNCC 5 cut(s) 494, 636, 637, 736, 832
PspOMI GGGCCC 1 cut(s) 634
PspPI GGNCC 4 cut(s) 575, 634, 635, 839
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 3 cut(s) 33, 185, 817
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 3 cut(s) 149, 517, 544
RsaNI GTAC 3 cut(s) 148, 516, 543
SaqAI TTAA 1 cut(s) 824
Sau3AI GATC 6 cut(s) 33, 185, 191, 310, 328, 817
Sau96I GGNCC 4 cut(s) 575, 634, 635, 839
SchI GAGTC 4 cut(s) 233, 365, 419, 618
ScrFI CCNGG 4 cut(s) 107, 112, 285, 680
SduI GDGCHC 2 cut(s) 350, 638
SetI ASST 7 cut(s) 65, 116, 178, 257, 610, 844, 909
SfaNI GCATC 1 cut(s) 935
SfcI CTRYAG 2 cut(s) 72, 171
SinI GGWCC 2 cut(s) 575, 839
Sse9I AATT 3 cut(s) 455, 549, 890
SsiI CCGC 3 cut(s) 789, 828, 837
SspMI CTAG 4 cut(s) 189, 339, 629, 773
StyD4I CCNGG 4 cut(s) 105, 110, 283, 678
StyI CCWWGG 2 cut(s) 255, 713
TaaI ACNGT 4 cut(s) 141, 275, 515, 933
TaqI TCGA 1 cut(s) 313
TasI AATT 3 cut(s) 455, 549, 890
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 824
Tru9I TTAA 1 cut(s) 824
TscAI CASTG 2 cut(s) 144, 358
TspDTI ATGAA 3 cut(s) 111, 144, 264
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 2 cut(s) 144, 358
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 575, 839
XbaI TCTAGA 2 cut(s) 188, 338
XceI RCATGY 3 cut(s) 202, 757, 926
XspI CTAG 4 cut(s) 189, 339, 629, 773
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.