Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Reverse (-)

18270072 .. 18271899

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCCACATTCAAAGGCAAAGTTTCCGAGAGGCTCTCTCGTATGTTTGCCGATCCACCCAGCTCAGCCTCTTCTGTTGTTGACGATGAAAATCCCCAGGCCAGGTCATATTCCAAAGGGGGTAAATCACTGTCTTCGTACTTTTCCTACATTATCCCATCTGCAGGCATTGGTGGATCTAGATCATACAAGCACGAGCTATCAGTTCCGCTTAGTAATGTGAACTTTGACTCCAAAGATGAAACCTTAGATACATATGAAGACTGTCATTCATCTGGCGAGAACGGGGTAACTGAAAATGGTCAAGAAAATGATGATGACCATGCTTCTATTGGGAGCACAAGTGGGTCTGAAGTGTTTGAAGAAGCAACTTTACAGTCAAGTTCAGATAAGCAGTTGGCATATCTCATGGATGACTCTGTCTTTAACCTTGGTGATGCTATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

150

Amino Acids

15.97

Weight (kDa)

4.34

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	47, 184
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	102, 164
AgsI	TTSAA	2 cut(s)	13, 362
AjnI	CCWGG	2 cut(s)	96, 101
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	63, 199
AluI	AGCT	2 cut(s)	63, 199
Alw21I	GWGCWC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	47, 184
AoxI	GGCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	446
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	126, 267
Bbv12I	GWGCWC	1 cut(s)	341
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	98, 103
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	98, 103
BmrFI	CCNGG	2 cut(s)	98, 103
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	2 cut(s)	126, 267
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 22, 54
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaBI	GATNNNNATC	2 cut(s)	90, 181
BsaJI	CCNNGG	2 cut(s)	96, 430
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 164
Bse8I	GATNNNNATC	2 cut(s)	90, 181
BseBI	CCWGG	2 cut(s)	98, 103
BseDI	CCNNGG	2 cut(s)	96, 430
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	2 cut(s)	90, 181
BseLI	CCNNNNNNNGG	2 cut(s)	102, 164
BseMII	CTCAG	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	102, 164
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	52, 176, 182
Bsp1720I	GCTNAGC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	47, 184
BssECI	CCNNGG	2 cut(s)	96, 430
BssMI	GATC	3 cut(s)	52, 176, 182
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	98, 103
Bst4CI	ACNGT	3 cut(s)	132, 266, 378
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	64, 212, 247
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	55, 179, 185
BstMBI	GATC	3 cut(s)	52, 176, 182
BstNI	CCWGG	2 cut(s)	98, 103
BstSCI	CCNGG	2 cut(s)	96, 101
BstSFI	CTRYAG	1 cut(s)	162
BstV2I	GAAGAC	2 cut(s)	126, 267
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	323, 409
CviJI	RGCY	5 cut(s)	34, 63, 68, 101, 199
CviKI_1	RGCY	5 cut(s)	34, 63, 68, 101, 199
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	64, 212, 247
DpnI	GATC	3 cut(s)	54, 178, 184
DpnII	GATC	3 cut(s)	52, 176, 182
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	96, 101
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	326, 412
FaiI	YATR	8 cut(s)	44, 109, 187, 256, 258, 324, 403, 410
FatI	CATG	2 cut(s)	322, 408
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	1 cut(s)	425
FspBI	CTAG	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	326, 412
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	230, 416
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	6, 82, 223
Hpy188I	TCNGA	3 cut(s)	28, 352, 388
Hpy188III	TCNNGA	2 cut(s)	180, 305
Hpy8I	GTNNAC	3 cut(s)	6, 82, 223
HpyCH4III	ACNGT	3 cut(s)	132, 266, 378
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	64, 212, 247
Hsp92II	CATG	2 cut(s)	326, 412
Kzo9I	GATC	3 cut(s)	52, 176, 182
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	7 cut(s)	73, 83, 88, 110, 115, 150, 261
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	54, 178, 184
MboI	GATC	3 cut(s)	52, 176, 182
MboII	GAAGA	4 cut(s)	63, 126, 272, 374
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	224, 410
MnlI	CCTC	2 cut(s)	24, 79
MseI	TTAA	2 cut(s)	426, 448
MspR9I	CCNGG	2 cut(s)	98, 103
MvaI	CCWGG	2 cut(s)	98, 103
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	3 cut(s)	52, 176, 182
NlaIII	CATG	2 cut(s)	326, 412
PflFI	GACNNNGTC	1 cut(s)	419
PleI	GAGTC	2 cut(s)	224, 410
PpsI	GAGTC	2 cut(s)	224, 410
Psp6I	CCWGG	2 cut(s)	96, 101
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	96, 101
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	426, 448
Sau3AI	GATC	3 cut(s)	52, 176, 182
SchI	GAGTC	2 cut(s)	224, 410
ScrFI	CCNGG	2 cut(s)	98, 103
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	65, 107, 201, 248, 432
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	162
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	96, 101
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	132, 266, 378
Tru1I	TTAA	2 cut(s)	426, 448
Tru9I	TTAA	2 cut(s)	426, 448
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	4 cut(s)	102, 255, 261, 273
TspRI	CASTG	1 cut(s)	135
Tth111I	GACNNNGTC	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.