MD13G1220900.v1.1

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0005395
Physical Location & Seq
Reverse (-)
21372623 .. 21375704
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1220900.v1.1.491

Sequence Viewer

Length: 951 bp
ATGTTCACATTGAAAGACAAAGTTACAGAGAAGCTCTCACATCTCTTTGCCGATGCGCCCACCTCACCCTCCTCCTCTTCTCTTCCTTCCCCTCTCGACGACAACAATCATCGTCCTGAGGCCAGGCCATATTCTAAAGGAGGTAAATCTTTGTCTTCATACTTTTCGTTACCATCGGTAGTCTTTGGTGTATCCCGATCAAACAAGCATCAATCAATAATTGTTAGTAATGGAGACTTTGAATCCCAAGATGAATCCGTGCATAGATATGTAGAGTGTCGTTCCCCACCAGGTGAGAACAATGAAAAGGAAAACAATCCTGAAAACGATGATGGCTGTGCTTCTGGAGGGAGCACCAGTGGTTCTGAGGTATTTGAAGAAGCAGCGGACCAGCACAGTCTACAGAAGCAACTACCGCTTCTTATGGATGACTCTGTCTTTATCTCCTCAGACCTGCATGAATTCTTGCTGTCATCTCTTCCTAATATAGTGAAGGGGTGCCAATGGGTTTTGCTGTATAGTACTTCGAAACATGGTATATCACTCCGCACACTTATCCGCCAAAGCGCCGAGCTTTCCGGTCCTTGTCTGCTGATTGTTGGAGATAGGCAAGGTGCTGTATTTGGTGGACTTCTAGAGGGCCCCTTGAAACCTACGGCAAAGAGAAAGTATCAAGGAACAAACCAAACATTTGTTTTCACGACCATATATGGAGAACCAAGGCTATTTAGACCGACTGGAGCCAACCGGTATTATTACATGTGTTTGAATGACATGCTTGCTCTTGGGGGAGGTGGTAACTATGCTCTAAGCCTAGATGGAGATTTGTTAAGCGGAACAAGCGGACCAAGTGAGACATTTGGGAACTCATGCTTGGCTCATAATGCAGAATTTGAGTTGAAGAATGTTGAGCTTTGGGGTTTTACACATGCGTCGCAGTACCTTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

317

Amino Acids

34.45

Weight (kDa)

5.38

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 143 - 308 1.2e-36 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 400
AciI CCGC 6 cut(s) 386, 416, 547, 559, 834, 843
AcsI RAATTY 2 cut(s) 461, 890
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 2 cut(s) 523, 941
AflIII ACRYGT 1 cut(s) 759
AgeI ACCGGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 13, 242, 377, 649, 769, 901
AjnI CCWGG 2 cut(s) 122, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 3 cut(s) 34, 574, 913
AluI AGCT 3 cut(s) 34, 574, 913
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 2 cut(s) 228, 848
AoxI GGCC 3 cut(s) 120, 125, 640
ApaI GGGCCC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 461, 890
AsiGI ACCGGT 1 cut(s) 747
AspLEI GCGC 2 cut(s) 58, 569
AspS9I GGNCC 5 cut(s) 388, 581, 640, 641, 845
AsuHPI GGTGA 2 cut(s) 57, 305
AsuII TTCGAA 1 cut(s) 527
AvaII GGWCC 3 cut(s) 388, 581, 845
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 498
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 395
BccI CCATC 3 cut(s) 181, 326, 812
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 124, 291
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 228, 848
BfaI CTAG 2 cut(s) 635, 815
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 462
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 124, 291
Bme18I GGWCC 3 cut(s) 388, 581, 845
BmgT120I GGNCC 5 cut(s) 388, 581, 640, 641, 845
BmiI GGNNCC 4 cut(s) 500, 642, 643, 742
BmrFI CCNGG 2 cut(s) 124, 291
BmsI GCATC 2 cut(s) 43, 217
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 2 cut(s) 366, 759
Bpu14I TTCGAA 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 719
BsaWI WCCGGW 2 cut(s) 578, 747
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 2 cut(s) 357, 742
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 124, 291
BseDI CCNNGG 1 cut(s) 719
BseGI GGATG 1 cut(s) 433
BseMII CTCAG 3 cut(s) 108, 357, 462
BseNI ACTGG 2 cut(s) 357, 742
BseRI GAGGAG 3 cut(s) 61, 64, 436
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 3 cut(s) 122, 127, 642
BshNI GGYRCC 1 cut(s) 498
BshTI ACCGGT 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 579, 748
BsmAI GTCTC 2 cut(s) 228, 848
BsnI GGCC 3 cut(s) 122, 127, 642
Bsp119I TTCGAA 1 cut(s) 527
Bsp120I GGGCCC 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 356, 644
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 6 cut(s) 386, 416, 547, 559, 834, 843
BspANI GGCC 3 cut(s) 122, 127, 642
BspCNI CTCAG 3 cut(s) 109, 358, 461
BspLI GGNNCC 4 cut(s) 500, 642, 643, 742
BspMI ACCTGC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 747
BsrI ACTGG 2 cut(s) 357, 742
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 1 cut(s) 719
BssMI GATC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 2 cut(s) 124, 291
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 3 cut(s) 82, 87, 483
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 4 cut(s) 117, 366, 448, 809
BstF5I GGATG 1 cut(s) 433
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 2 cut(s) 58, 569
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 228, 848
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 415, 840, 884
BstNI CCWGG 2 cut(s) 124, 291
BstNSI RCATGY 3 cut(s) 763, 778, 932
BstSCI CCNGG 2 cut(s) 122, 289
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 122, 127, 642
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 780
CfoI GCGC 2 cut(s) 58, 569
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 5 cut(s) 388, 581, 640, 641, 845
CseI GACGC 1 cut(s) 921
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 2 cut(s) 522, 940
CspAI ACCGGT 1 cut(s) 747
CviAII CATG 6 cut(s) 458, 533, 760, 775, 870, 929
CviQI GTAC 2 cut(s) 522, 940
DdeI CTNAG 4 cut(s) 117, 366, 448, 809
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DraIII CACNNNGTG 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 82, 87, 483
EarI CTCTTC 3 cut(s) 82, 87, 483
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 719
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 388, 581, 845
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 640, 641
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 122, 289
EcoT14I CCWWGG 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 6 cut(s) 461, 536, 763, 778, 873, 932
FatI CATG 6 cut(s) 457, 532, 759, 774, 869, 928
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 635, 815
GlaI GCGC 2 cut(s) 57, 568
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 2 cut(s) 366, 759
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 3 cut(s) 122, 127, 642
HapII CCGG 2 cut(s) 579, 748
HgaI GACGC 1 cut(s) 921
HhaI GCGC 2 cut(s) 58, 569
Hin1II CATG 6 cut(s) 461, 536, 763, 778, 873, 932
Hin6I GCGC 2 cut(s) 56, 567
HinP1I GCGC 2 cut(s) 56, 567
HinfI GANTC 3 cut(s) 242, 254, 431
HpaII CCGG 2 cut(s) 579, 748
HphI GGTGA 2 cut(s) 57, 305
Hpy166II GTNNAC 3 cut(s) 6, 401, 629
Hpy188I TCNGA 2 cut(s) 367, 451
Hpy188III TCNNGA 7 cut(s) 95, 116, 195, 320, 345, 635, 700
Hpy8I GTNNAC 3 cut(s) 6, 401, 629
Hpy99I CGWCG 2 cut(s) 101, 937
HpyAV CCTTC 2 cut(s) 96, 487
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 262, 457, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 840, 884
HpyF3I CTNAG 4 cut(s) 117, 366, 448, 809
Hsp92II CATG 6 cut(s) 461, 536, 763, 778, 873, 932
HspAI GCGC 2 cut(s) 56, 567
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 351, 740
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 2 cut(s) 43, 217
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 2 cut(s) 635, 815
MaeIII GTNAC 3 cut(s) 22, 168, 797
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 6 cut(s) 69, 74, 147, 389, 470, 913
MhlI GDGCHC 2 cut(s) 356, 644
MluCI AATT 3 cut(s) 219, 461, 890
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 580
MseI TTAA 1 cut(s) 830
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 2 cut(s) 579, 748
MspR9I CCNGG 2 cut(s) 124, 291
MvaI CCWGG 2 cut(s) 124, 291
MwoI GCNNNNNNNGC 3 cut(s) 415, 840, 884
NdeII GATC 1 cut(s) 197
NlaIII CATG 6 cut(s) 461, 536, 763, 778, 873, 932
NlaIV GGNNCC 4 cut(s) 500, 642, 643, 742
NmeAIII GCCGAG 1 cut(s) 595
NspI RCATGY 3 cut(s) 763, 778, 932
NspV TTCGAA 1 cut(s) 527
PciI ACATGT 1 cut(s) 759
PfeI GAWTC 2 cut(s) 242, 254
PflFI GACNNNGTC 1 cut(s) 434
PinAI ACCGGT 1 cut(s) 747
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 122, 289
PspGI CCWGG 2 cut(s) 122, 289
PspN4I GGNNCC 4 cut(s) 500, 642, 643, 742
PspOMI GGGCCC 1 cut(s) 640
PspPI GGNCC 5 cut(s) 388, 581, 640, 641, 845
PsyI GACNNNGTC 1 cut(s) 434
RsaI GTAC 2 cut(s) 523, 941
RsaNI GTAC 2 cut(s) 522, 940
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 830
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 5 cut(s) 388, 581, 640, 641, 845
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 124, 291
SduI GDGCHC 2 cut(s) 356, 644
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 2 cut(s) 43, 217
SfcI CTRYAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 3 cut(s) 388, 581, 845
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 3 cut(s) 219, 461, 890
SsiI CCGC 6 cut(s) 386, 416, 547, 559, 834, 843
SspMI CTAG 2 cut(s) 635, 815
StyD4I CCNGG 2 cut(s) 122, 289
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 96, 527
TaqII GACCGA 1 cut(s) 748
TasI AATT 3 cut(s) 219, 461, 890
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 2 cut(s) 242, 254
Tru1I TTAA 1 cut(s) 830
Tru9I TTAA 1 cut(s) 830
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 147, 267, 318, 474
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 434
VpaK11BI GGWCC 3 cut(s) 388, 581, 845
XapI RAATTY 2 cut(s) 461, 890
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 3 cut(s) 763, 778, 932
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 2 cut(s) 635, 815
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.