Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Reverse (-)

3364488 .. 3367788

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G047600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTCACTTTGAAAGAGAAGGTTACAGAGAGGCTCTCACGTCTCTTTGCTGTTTCACCCGACTCATCATCCTCTTCTTCTCTTCCTCCCTCACCGGACCATCATCATCCTGGGGCCAGGCCTGATTCTAAAGGGGGTAAATCAATGTCGTCATATTTTTCCTACGTTATCCCGTCAGTTGGCTTTGGTGAATCCAGATCAGGCAAGCATCAACGATCACTCTCTGTTAGTAATGTAGACTTTGAATCCCAAGATGAATCCCTACATAGATATGTAGAATGTCGTTCACCAGGTGAGAACAAGGAAACAGAAAATAATCGAGAAAGTGATTACGACCATGTTTCCGGTGGGAGCACCAGTGGTTCTGAGGTGTTTGAAGAAGCAACTGACCAGCATAGTCCACAGAAGCATCTACCCTATCTCATGGATGACTCTGTATTTATCTCCTCAGACCTGCATGAATTCTTGCTGTCATCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGTTTTGCTGTATAGTACGTTGAAACATGGTATATCACTCCGTACTCTTATCCGCAAGAGTTCTGACCTCTCTGGTCCTTGTTTGCTGATTGTTGGAGATAGGCAAGGTGCTGTGTTTGGTGGACTTCTAGAGGGCCCCTTGAAACCTACGGCAAAAAGAAAATATCAAGGAACAAACCAGACATTTGTCTTTACAACCATATATGGTGAACCAAGGCTATTTAGACCAACTGGAGCCAACAGGTATTACTACATGTGTTTGAATGACATGCTAGCTCTTGGAGGTGGTGGTAACTATGCTTTATGCTTGGATGGAGATCTGTTAAGTGGAACAAGCGGACCATGTGAAACATTTGGGAACTTGTGCTTGGCTCATAACTCAGAGTTTGAGTTGAAGAATGTTGAGGTAATGTGTTTGAGCAACCTCTTCGCCTTTAAGTCTTTGGGGTTTTACACATGCGTCGCGGTACCTTCCTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

330

Amino Acids

36.12

Weight (kDa)

6.0

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	973
AccB1I	GGYRCC	2 cut(s)	498, 973
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	971
AciI	CCGC	3 cut(s)	559, 843, 971
AcsI	RAATTY	1 cut(s)	461
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	3 cut(s)	523, 550, 975
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	7 cut(s)	13, 245, 377, 529, 649, 769, 901
AjiI	CACGTC	1 cut(s)	41
AjnI	CCWGG	3 cut(s)	109, 116, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	1 cut(s)	782
AluI	AGCT	1 cut(s)	782
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	3 cut(s)	114, 119, 640
ApaI	GGGCCC	1 cut(s)	644
ApoI	RAATTY	1 cut(s)	461
Asp718I	GGTACC	1 cut(s)	973
AspS9I	GGNCC	6 cut(s)	97, 114, 581, 640, 641, 845
AsuHPI	GGTGA	6 cut(s)	48, 84, 200, 279, 305, 725
AsuNHI	GCTAGC	1 cut(s)	778
AvaII	GGWCC	3 cut(s)	97, 581, 845
BaeGI	GKGCMC	1 cut(s)	644
BanI	GGYRCC	2 cut(s)	498, 973
BanII	GRGCYC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	2 cut(s)	108, 812
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	916, 950
BciT130I	CCWGG	3 cut(s)	111, 118, 291
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	635, 779
BfuAI	ACCTGC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	823
Bme1390I	CCNGG	3 cut(s)	111, 118, 291
Bme18I	GGWCC	3 cut(s)	97, 581, 845
BmgBI	CACGTC	1 cut(s)	41
BmgT120I	GGNCC	6 cut(s)	97, 114, 581, 640, 641, 845
BmiI	GGNNCC	6 cut(s)	115, 500, 642, 643, 742, 975
BmrFI	CCNGG	3 cut(s)	111, 118, 291
BmsI	GCATC	2 cut(s)	217, 418
BmtI	GCTAGC	1 cut(s)	782
BoxI	GACNNNNGTC	1 cut(s)	692
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	110, 719
BsaWI	WCCGGW	2 cut(s)	94, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	357, 742
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	111, 118, 291
BseDI	CCNNGG	2 cut(s)	110, 719
BseGI	GGATG	4 cut(s)	68, 106, 433, 823
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	3 cut(s)	357, 462, 900
BseNI	ACTGG	2 cut(s)	357, 742
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	971
BshFI	GGCC	3 cut(s)	116, 121, 642
BshNI	GGYRCC	2 cut(s)	498, 973
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	95, 345
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	116, 121, 642
Bsp120I	GGGCCC	1 cut(s)	640
Bsp1286I	GDGCHC	2 cut(s)	356, 644
Bsp143I	GATC	3 cut(s)	197, 215, 823
BspACI	CCGC	3 cut(s)	559, 843, 971
BspANI	GGCC	3 cut(s)	116, 121, 642
BspCNI	CTCAG	3 cut(s)	358, 461, 899
BspFNI	CGCG	1 cut(s)	971
BspLI	GGNNCC	6 cut(s)	115, 500, 642, 643, 742, 975
BspMI	ACCTGC	1 cut(s)	462
BspOI	GCTAGC	1 cut(s)	782
BspT107I	GGYRCC	2 cut(s)	498, 973
BsrI	ACTGG	2 cut(s)	357, 742
BssECI	CCNNGG	2 cut(s)	110, 719
BssMI	GATC	3 cut(s)	197, 215, 823
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	3 cut(s)	111, 118, 291
Bst6I	CTCTTC	4 cut(s)	79, 87, 483, 938
BstC8I	GCNNGC	2 cut(s)	206, 780
BstDEI	CTNAG	3 cut(s)	366, 448, 886
BstF5I	GGATG	4 cut(s)	68, 106, 433, 823
BstFNI	CGCG	1 cut(s)	971
BstKTI	GATC	3 cut(s)	200, 218, 826
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	197, 215, 823
BstNI	CCWGG	3 cut(s)	111, 118, 291
BstNSI	RCATGY	3 cut(s)	763, 778, 966
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	3 cut(s)	109, 116, 289
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	971
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	3 cut(s)	116, 121, 642
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	68, 106, 433, 823
BtsIMutI	CAGTG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	206, 780
Cfr13I	GGNCC	6 cut(s)	97, 114, 581, 640, 641, 845
CseI	GACGC	1 cut(s)	955
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	3 cut(s)	522, 549, 974
CviAII	CATG	8 cut(s)	338, 424, 458, 533, 760, 775, 849, 963
CviJI	RGCY	9 cut(s)	34, 116, 121, 183, 642, 724, 743, 782, 878
CviKI_1	RGCY	9 cut(s)	34, 116, 121, 183, 642, 724, 743, 782, 878
CviQI	GTAC	3 cut(s)	522, 549, 974
DdeI	CTNAG	3 cut(s)	366, 448, 886
DpnI	GATC	3 cut(s)	199, 217, 825
DpnII	GATC	3 cut(s)	197, 215, 823
DraIII	CACNNNGTG	1 cut(s)	293
Eam1104I	CTCTTC	4 cut(s)	79, 87, 483, 938
EarI	CTCTTC	4 cut(s)	79, 87, 483, 938
Eco130I	CCWWGG	1 cut(s)	719
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	97, 581, 845
EcoO109I	RGGNCCY	2 cut(s)	640, 641
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	109, 116, 289
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	8 cut(s)	341, 427, 461, 536, 763, 778, 852, 966
FatI	CATG	8 cut(s)	337, 423, 457, 532, 759, 774, 848, 962
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	4 cut(s)	55, 93, 440, 830
FriOI	GRGCYC	1 cut(s)	644
FspBI	CTAG	2 cut(s)	635, 779
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	3 cut(s)	116, 121, 642
HapII	CCGG	2 cut(s)	95, 345
HgaI	GACGC	1 cut(s)	955
Hin1II	CATG	8 cut(s)	341, 427, 461, 536, 763, 778, 852, 966
HinfI	GANTC	6 cut(s)	62, 125, 191, 245, 257, 431
HpaII	CCGG	2 cut(s)	95, 345
HphI	GGTGA	6 cut(s)	48, 84, 200, 279, 305, 725
Hpy166II	GTNNAC	6 cut(s)	6, 238, 287, 401, 629, 716
Hpy188I	TCNGA	4 cut(s)	367, 451, 571, 889
Hpy188III	TCNNGA	3 cut(s)	195, 320, 635
Hpy8I	GTNNAC	6 cut(s)	6, 238, 287, 401, 629, 716
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	2 cut(s)	13, 987
HpyCH4IV	ACGT	3 cut(s)	40, 165, 524
HpyCH4V	TGCA	1 cut(s)	457
HpyF3I	CTNAG	3 cut(s)	366, 448, 886
HpySE526I	ACGT	3 cut(s)	40, 165, 524
Hsp92II	CATG	8 cut(s)	341, 427, 461, 536, 763, 778, 852, 966
KpnI	GGTACC	1 cut(s)	977
Kzo9I	GATC	3 cut(s)	197, 215, 823
LmnI	GCTCC	2 cut(s)	351, 740
LweI	GCATC	2 cut(s)	217, 418
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	2 cut(s)	635, 779
MaeII	ACGT	3 cut(s)	40, 165, 524
MaeIII	GTNAC	2 cut(s)	22, 797
MalI	GATC	3 cut(s)	199, 217, 825
MboI	GATC	3 cut(s)	197, 215, 823
MboII	GAAGA	7 cut(s)	66, 69, 74, 389, 470, 913, 925
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	356, 644
MluCI	AATT	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	56, 425
MmeI	TCCRAC	1 cut(s)	580
MseI	TTAA	2 cut(s)	830, 942
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	95, 345
MspR9I	CCNGG	3 cut(s)	111, 118, 291
MvaI	CCWGG	3 cut(s)	111, 118, 291
MvnI	CGCG	1 cut(s)	971
NdeII	GATC	3 cut(s)	197, 215, 823
NheI	GCTAGC	1 cut(s)	778
NlaIII	CATG	8 cut(s)	341, 427, 461, 536, 763, 778, 852, 966
NlaIV	GGNNCC	6 cut(s)	115, 500, 642, 643, 742, 975
NspI	RCATGY	3 cut(s)	763, 778, 966
PceI	AGGCCT	1 cut(s)	121
PciI	ACATGT	1 cut(s)	759
PfeI	GAWTC	4 cut(s)	125, 191, 245, 257
PleI	GAGTC	2 cut(s)	56, 425
PpsI	GAGTC	2 cut(s)	56, 425
PscI	ACATGT	1 cut(s)	759
PshAI	GACNNNNGTC	1 cut(s)	692
Psp6I	CCWGG	3 cut(s)	109, 116, 289
PspGI	CCWGG	3 cut(s)	109, 116, 289
PspN4I	GGNNCC	6 cut(s)	115, 500, 642, 643, 742, 975
PspOMI	GGGCCC	1 cut(s)	640
PspPI	GGNCC	6 cut(s)	97, 114, 581, 640, 641, 845
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	3 cut(s)	523, 550, 975
RsaNI	GTAC	3 cut(s)	522, 549, 974
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	830, 942
Sau3AI	GATC	3 cut(s)	197, 215, 823
Sau96I	GGNCC	6 cut(s)	97, 114, 581, 640, 641, 845
SchI	GAGTC	2 cut(s)	56, 425
ScrFI	CCNGG	3 cut(s)	111, 118, 291
SduI	GDGCHC	2 cut(s)	356, 644
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	217, 418
SinI	GGWCC	3 cut(s)	97, 581, 845
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	461
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	3 cut(s)	559, 843, 971
SspMI	CTAG	2 cut(s)	635, 779
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	3 cut(s)	109, 116, 289
StyI	CCWWGG	1 cut(s)	719
TaiI	ACGT	3 cut(s)	43, 168, 527
TaqI	TCGA	1 cut(s)	319
TasI	AATT	1 cut(s)	461
TfiI	GAWTC	4 cut(s)	125, 191, 245, 257
Tru1I	TTAA	2 cut(s)	830, 942
Tru9I	TTAA	2 cut(s)	830, 942
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	270, 474
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	3 cut(s)	97, 581, 845
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	3 cut(s)	763, 778, 966
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 344
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	635, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.