MD16G1226000.v1.1

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0005395
Physical Location & Seq
Reverse (-)
22857554 .. 22860429
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1226000.v1.1.491

Sequence Viewer

Length: 951 bp
ATGTTTACATTGAGAGACAAAGTTACACAGAAGCTCTCACGTTTCTTTGCCGATGCACCCAACTCGCCGTCTTCTTCTTCTCTTCCTTCCCCACTCGACGACAACGATCATCCTCCTGAGGCCAGGCTGTATTCTACAGGGGGTAAATATTTGCCTTCATACTTTTCCTGTCCATCGGTAGGCTTTGGTGGATCCACTTCAAACAAGCATCAATCAACAATTGTTAGTAACGGCAACTTTGAATCCCAAGATGAAACCGTTCATAGATATGTAGAATGTCGTTCCCCACCAGGTGAGAACAAGGAAACAGAAAACAATTGTGAAAACGATGACGACCATGCTTCTGGAGGGAGCACCAGCGGTTCTGAGGTATTTGAAGTAGCAGCTGACCAGCAGAGTCTACAGAAGCAACTACCGCTTCTCATGGATGACTCGGTCTTTATTTCCTCAGACCTGCATGAATTCTTACTGTCATCACTTCCTAATATAGTGAAAGGGTGCCAATGGATTTTGCTGTATAGTACGGCGAAACATGGTATATCACTCCGCACACTTATCCGCAAAAGCTCTGAGCTTTCTGGTCCTTGTTTGCTGATTGCTGGAGATAGGCAAGGTGCTGTATTTGGTGGACTTCTAGAGGGGCCCTTGAAACCTACGTCAAAGAGAAAATATCAAGGAACAAACCAAACATTTGTATTCACGACCATATATGGAGAACCAAGGCTGTTTAGGCCAACAGGAGCCAACCGGTATTATTACATGTGTTTGAATGACTTGCTAGCTCTTGGGGGAGGTGGTAACTATGCTCTATGCCTAGATGGAGATTTGTTAAGCGGAACAAGCGGATCATGTGAAACATTTGGGAACTTATGCTTGGCGCATAACGGAGAATTTGAGTTGAAGAATGTTGAGCTTTGGGGTTTTACACACGTGTCACGGTACCTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

317

Amino Acids

34.53

Weight (kDa)

5.38

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 143 - 308 1.2e-35 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 939
AccB1I GGYRCC 2 cut(s) 498, 939
AccI GTMKAC 1 cut(s) 400
AciI CCGC 6 cut(s) 360, 416, 547, 559, 834, 843
AclWI GGATC 3 cut(s) 186, 199, 853
AcsI RAATTY 2 cut(s) 461, 890
AcvI CACGTG 1 cut(s) 931
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 2 cut(s) 523, 941
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 3 cut(s) 759, 928, 930
AgeI ACCGGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 201, 242, 377, 649, 769, 901
AjnI CCWGG 2 cut(s) 122, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 6 cut(s) 34, 386, 567, 574, 782, 913
AluI AGCT 6 cut(s) 34, 386, 567, 574, 782, 913
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 186, 199, 853
AoxI GGCC 3 cut(s) 120, 641, 731
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 461, 890
AsiGI ACCGGT 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 258
Asp718I GGTACC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 3 cut(s) 581, 641, 642
AsuHPI GGTGA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 778
AvaII GGWCC 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 645
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 498, 939
BanII GRGCYC 1 cut(s) 645
BbrPI CACGTG 1 cut(s) 931
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 181, 812
BceAI ACGGC 3 cut(s) 52, 247, 540
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 124, 291
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 635, 779, 815
BfmI CTRYAG 2 cut(s) 135, 401
BfuAI ACCTGC 1 cut(s) 462
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 124, 291
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 3 cut(s) 581, 641, 642
BmiI GGNNCC 6 cut(s) 193, 500, 642, 643, 742, 941
BmrFI CCNGG 2 cut(s) 124, 291
BmsI GCATC 2 cut(s) 43, 217
BmtI GCTAGC 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 2 cut(s) 366, 621
BsaAI YACGTR 1 cut(s) 931
BsaJI CCNNGG 1 cut(s) 719
BsaWI WCCGGW 1 cut(s) 747
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 747
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 124, 291
BseDI CCNNGG 1 cut(s) 719
BseGI GGATG 2 cut(s) 109, 433
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 4 cut(s) 108, 357, 462, 561
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 3 cut(s) 122, 643, 733
BshNI GGYRCC 2 cut(s) 498, 939
BshTI ACCGGT 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 3 cut(s) 122, 643, 733
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 356, 645
Bsp143I GATC 3 cut(s) 106, 191, 845
BspACI CCGC 6 cut(s) 360, 416, 547, 559, 834, 843
BspANI GGCC 3 cut(s) 122, 643, 733
BspCNI CTCAG 4 cut(s) 109, 358, 461, 562
BspLI GGNNCC 6 cut(s) 193, 500, 642, 643, 742, 941
BspMI ACCTGC 1 cut(s) 462
BspOI GCTAGC 1 cut(s) 782
BspPI GGATC 3 cut(s) 186, 199, 853
BspT107I GGYRCC 2 cut(s) 498, 939
BsrFI RCCGGY 1 cut(s) 747
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 1 cut(s) 719
BssMI GATC 3 cut(s) 106, 191, 845
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 2 cut(s) 124, 291
Bst4CI ACNGT 3 cut(s) 259, 471, 939
Bst6I CTCTTC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 931
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 4 cut(s) 117, 366, 448, 570
BstF5I GGATG 2 cut(s) 109, 433
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 3 cut(s) 109, 194, 848
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 106, 191, 845
BstMWI GCNNNNNNNGC 3 cut(s) 415, 730, 840
BstNI CCWGG 2 cut(s) 124, 291
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 2 cut(s) 122, 289
BstSFI CTRYAG 2 cut(s) 135, 401
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 122, 643, 733
BtsCI GGATG 2 cut(s) 109, 433
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 780
CfoI GCGC 1 cut(s) 880
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 581, 641, 642
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 2 cut(s) 522, 940
CspAI ACCGGT 1 cut(s) 747
CviAII CATG 7 cut(s) 338, 424, 458, 533, 760, 849, 948
CviQI GTAC 2 cut(s) 522, 940
DdeI CTNAG 4 cut(s) 117, 366, 448, 570
DpnI GATC 3 cut(s) 108, 193, 847
DpnII GATC 3 cut(s) 106, 191, 845
DraIII CACNNNGTG 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 719
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 581
Eco72I CACGTG 1 cut(s) 931
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 641, 642
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 122, 289
EcoT14I CCWWGG 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 7 cut(s) 341, 427, 461, 536, 763, 852, 951
FatI CATG 7 cut(s) 337, 423, 457, 532, 759, 848, 947
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 2 cut(s) 96, 440
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 3 cut(s) 635, 779, 815
GlaI GCGC 1 cut(s) 879
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 2 cut(s) 366, 621
HaeIII GGCC 3 cut(s) 122, 643, 733
HapII CCGG 1 cut(s) 748
HhaI GCGC 1 cut(s) 880
Hin1II CATG 7 cut(s) 341, 427, 461, 536, 763, 852, 951
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HinfI GANTC 3 cut(s) 242, 397, 431
HpaII CCGG 1 cut(s) 748
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 3 cut(s) 6, 401, 629
Hpy188I TCNGA 3 cut(s) 367, 451, 571
Hpy188III TCNNGA 4 cut(s) 116, 345, 635, 700
Hpy8I GTNNAC 3 cut(s) 6, 401, 629
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 96, 165
HpyCH4III ACNGT 3 cut(s) 259, 471, 939
HpyCH4IV ACGT 3 cut(s) 40, 656, 930
HpyCH4V TGCA 2 cut(s) 56, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 730, 840
HpyF3I CTNAG 4 cut(s) 117, 366, 448, 570
HpySE526I ACGT 3 cut(s) 40, 656, 930
Hsp92II CATG 7 cut(s) 341, 427, 461, 536, 763, 852, 951
HspAI GCGC 1 cut(s) 878
KpnI GGTACC 1 cut(s) 943
Kzo9I GATC 3 cut(s) 106, 191, 845
LmnI GCTCC 2 cut(s) 351, 740
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 2 cut(s) 43, 217
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 3 cut(s) 635, 779, 815
MaeII ACGT 3 cut(s) 40, 656, 930
MaeIII GTNAC 4 cut(s) 22, 227, 797, 933
MalI GATC 3 cut(s) 108, 193, 847
MboI GATC 3 cut(s) 106, 191, 845
MboII GAAGA 5 cut(s) 63, 66, 69, 74, 913
MfeI CAATTG 2 cut(s) 219, 316
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 356, 645
MluCI AATT 4 cut(s) 219, 316, 461, 890
MlyI GAGTC 2 cut(s) 406, 425
MnlI CCTC 7 cut(s) 112, 123, 341, 361, 457, 631, 785
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 830
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 360, 386
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 124, 291
MunI CAATTG 2 cut(s) 219, 316
MvaI CCWGG 2 cut(s) 124, 291
MwoI GCNNNNNNNGC 3 cut(s) 415, 730, 840
NdeII GATC 3 cut(s) 106, 191, 845
NheI GCTAGC 1 cut(s) 778
NlaIII CATG 7 cut(s) 341, 427, 461, 536, 763, 852, 951
NlaIV GGNNCC 6 cut(s) 193, 500, 642, 643, 742, 941
NmuCI GTSAC 1 cut(s) 933
NspI RCATGY 1 cut(s) 763
PciI ACATGT 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 434
PinAI ACCGGT 1 cut(s) 747
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 2 cut(s) 405, 425
PmaCI CACGTG 1 cut(s) 931
PmlI CACGTG 1 cut(s) 931
PpsI GAGTC 2 cut(s) 405, 425
Ppu21I YACGTR 1 cut(s) 931
PscI ACATGT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 122, 289
PspCI CACGTG 1 cut(s) 931
PspGI CCWGG 2 cut(s) 122, 289
PspN4I GGNNCC 6 cut(s) 193, 500, 642, 643, 742, 941
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 3 cut(s) 581, 641, 642
PsuI RGATCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 523, 941
RsaNI GTAC 2 cut(s) 522, 940
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 830
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 3 cut(s) 106, 191, 845
Sau96I GGNCC 3 cut(s) 581, 641, 642
SchI GAGTC 2 cut(s) 406, 425
ScrFI CCNGG 2 cut(s) 124, 291
SduI GDGCHC 2 cut(s) 356, 645
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 2 cut(s) 43, 217
SfcI CTRYAG 2 cut(s) 135, 401
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 4 cut(s) 219, 316, 461, 890
SsiI CCGC 6 cut(s) 360, 416, 547, 559, 834, 843
SspI AATATT 1 cut(s) 149
SspMI CTAG 3 cut(s) 635, 779, 815
StyD4I CCNGG 2 cut(s) 122, 289
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 3 cut(s) 259, 471, 939
TaiI ACGT 3 cut(s) 43, 659, 933
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 424
TasI AATT 4 cut(s) 219, 316, 461, 890
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 830
Tru9I TTAA 1 cut(s) 830
TseFI GTSAC 1 cut(s) 933
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 933
TspDTI ATGAA 4 cut(s) 147, 251, 267, 474
TspGWI ACGGA 1 cut(s) 900
Tth111I GACNNNGTC 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 2 cut(s) 461, 890
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 3 cut(s) 635, 779, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.