Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Reverse (-)

8667846 .. 8671114

Gene Structure 3269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGATTCATTCAATCCATCACAATGTCCACATTCAAAGACAAAGTTTCCGAGAGGATCTCCCGTCTGTTTGGCGATTCACCCAGCTCAGCCTCTGCTGTTCCTTCCCCAGATGAGGGTGAAAATCCCCAGGCCAGGTCATATTCAAAAGGGGGTAAATCACTGTCTTCGTACTTTTCATCCATTATCCCATCTGTAGGTGGTGGTGGATCTAGATCATACAAGCACCAGCAATCAGTCCCACTTAGTAATGTGAACTTTGACTCCAAATATGAAACCTTGGATACATTTGAAGACTGTCATTCTCCTGGTGGGAACAGGGAAACTGAAAATGATCGAGAAAACGATGATGATCATGCTTCTAGAGGGAGCACCAGTGAGTCTGAAGTGTTTGAAGAAGCAACTTTACAGCAAAGTTCAGAAAAGCAACTGTCCTATCTCATGGATGACTCTGTCTTTATCTCCTCTGACTTGCTTGAATTTTTGCTTTCTTCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGTTTTACTATACAGTACGGCAAAACATGGTATATCACTCCGTACACTAATTCGCAAGAGCGCTGAAGTTTCCGGTCCATGTCTGCTGATTGGTGGAGATACACAAGGTGCTGTGTTTGGTGGACTCCTAGAGGGCCCCTTGAAACCAACTGCAAAGAGAAAATATCAAGGAACAAACCAGGCATTTGTTTTCACTACCATATATGGTCAACCAAGGCTATTTAGACCAACTGGAGCCAATCGTTACTATTACATGTGTTTGAATGATATGCTAGCGTTTGGGGGTGGCGGTAACTTTGCTTTATGCTTAGATGGAGATCTGTTAAGCGGAACTAGTGGACCTTGTGAAACATTTGGGAACTTATGCTTGGCTCATAAACCAGAGTTTGAATTGAAGAATGTTGAGTTTACTCCACTATTGAACATAGGAGGGTTCAATTTGACATGGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

326

Amino Acids

35.6

Weight (kDa)

5.1

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TLD	PF07534	149 - 310	1.3e-33	TLDc domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	516
AciI	CCGC	2 cut(s)	813, 852
AclWI	GGATC	2 cut(s)	65, 217
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	2 cut(s)	405, 609
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	3 cut(s)	173, 541, 568
AfeI	AGCGCT	1 cut(s)	586
AfiI	CCNNNNNNNGG	4 cut(s)	115, 116, 135, 197
AflIII	ACRYGT	1 cut(s)	777
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	4 cut(s)	129, 134, 307, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	65, 217
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor51HI	AGCGCT	1 cut(s)	586
AoxI	GGCC	2 cut(s)	132, 658
ApaI	GGGCCC	1 cut(s)	662
ApoI	RAATTY	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	4 cut(s)	599, 658, 659, 863
AsuHPI	GGTGA	2 cut(s)	72, 131
AsuNHI	GCTAGC	1 cut(s)	796
AvaII	GGWCC	2 cut(s)	599, 863
BaeGI	GKGCMC	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	662
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbsI	GAAGAC	2 cut(s)	159, 300
Bbv12I	GWGCWC	1 cut(s)	374
BccI	CCATC	3 cut(s)	26, 199, 830
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	4 cut(s)	131, 136, 309, 704
BciVI	GTATCC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	5 cut(s)	213, 363, 653, 797, 858
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	841
BlpI	GCTNAGC	1 cut(s)	88
Bme1390I	CCNGG	4 cut(s)	131, 136, 309, 704
Bme18I	GGWCC	2 cut(s)	599, 863
BmgT120I	GGNCC	4 cut(s)	599, 658, 659, 863
BmiI	GGNNCC	4 cut(s)	518, 660, 661, 760
BmrFI	CCNGG	4 cut(s)	131, 136, 309, 704
BmtI	GCTAGC	1 cut(s)	800
BpiI	GAAGAC	2 cut(s)	159, 300
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	777
Bpu1102I	GCTNAGC	1 cut(s)	88
BsaBI	GATNNNNATC	3 cut(s)	214, 351, 840
BsaJI	CCNNGG	3 cut(s)	129, 279, 737
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 361, 391
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 116, 135, 197
Bse1I	ACTGG	2 cut(s)	375, 760
Bse8I	GATNNNNATC	3 cut(s)	214, 351, 840
BseBI	CCWGG	4 cut(s)	131, 136, 309, 704
BseDI	CCNNGG	3 cut(s)	129, 279, 737
BseGI	GGATG	3 cut(s)	179, 451, 979
BseJI	GATNNNNATC	3 cut(s)	214, 351, 840
BseLI	CCNNNNNNNGG	4 cut(s)	115, 116, 135, 197
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	375, 760
BseRI	GAGGAG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	662
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	2 cut(s)	134, 660
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	115, 116, 135, 197
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	134, 660
Bsp120I	GGGCCC	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	374, 662
Bsp143I	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
Bsp1720I	GCTNAGC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	813, 852
BspANI	GGCC	2 cut(s)	134, 660
BspCNI	CTCAG	1 cut(s)	101
BspLI	GGNNCC	4 cut(s)	518, 660, 661, 760
BspOI	GCTAGC	1 cut(s)	800
BspPI	GGATC	2 cut(s)	65, 217
BspT107I	GGYRCC	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	375, 760
BssECI	CCNNGG	3 cut(s)	129, 279, 737
BssMI	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
BssT1I	CCWWGG	2 cut(s)	279, 737
Bst2UI	CCWGG	4 cut(s)	131, 136, 309, 704
Bst4CI	ACNGT	4 cut(s)	165, 299, 432, 539
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	88, 245, 832
BstF5I	GGATG	3 cut(s)	179, 451, 979
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	6 cut(s)	60, 212, 218, 337, 355, 844
BstMBI	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
BstNI	CCWGG	4 cut(s)	131, 136, 309, 704
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	129, 134, 307, 702
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	662
BstV2I	GAAGAC	2 cut(s)	159, 300
BstX2I	RGATCY	3 cut(s)	57, 209, 841
BstYI	RGATCY	3 cut(s)	57, 209, 841
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	134, 660
BtsCI	GGATG	3 cut(s)	179, 451, 979
BtsIMutI	CAGTG	2 cut(s)	161, 382
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	4 cut(s)	599, 658, 659, 863
Csp6I	GTAC	3 cut(s)	172, 540, 567
CviAII	CATG	6 cut(s)	356, 442, 551, 603, 778, 969
CviJI	RGCY	7 cut(s)	87, 92, 134, 660, 742, 761, 896
CviKI_1	RGCY	7 cut(s)	87, 92, 134, 660, 742, 761, 896
CviQI	GTAC	3 cut(s)	172, 540, 567
DdeI	CTNAG	3 cut(s)	88, 245, 832
DpnI	GATC	6 cut(s)	59, 211, 217, 336, 354, 843
DpnII	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
DraIII	CACNNNGTG	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	279, 737
Eco24I	GRGCYC	1 cut(s)	662
Eco47I	GGWCC	2 cut(s)	599, 863
Eco47III	AGCGCT	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	405, 609
EcoO109I	RGGNCCY	2 cut(s)	658, 659
EcoRII	CCWGG	4 cut(s)	129, 134, 307, 702
EcoT14I	CCWWGG	2 cut(s)	279, 737
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	2 cut(s)	279, 737
FaeI	CATG	6 cut(s)	359, 445, 554, 606, 781, 972
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	6 cut(s)	355, 441, 550, 602, 777, 968
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	2 cut(s)	166, 458
FriOI	GRGCYC	1 cut(s)	662
FspBI	CTAG	5 cut(s)	213, 363, 653, 797, 858
GlaI	GCGC	1 cut(s)	586
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	134, 660
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	6 cut(s)	359, 445, 554, 606, 781, 972
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	6 cut(s)	6, 77, 263, 380, 449, 648
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	2 cut(s)	72, 131
Hpy166II	GTNNAC	7 cut(s)	30, 256, 569, 647, 734, 863, 933
Hpy188I	TCNGA	4 cut(s)	52, 385, 421, 469
Hpy188III	TCNNGA	3 cut(s)	213, 338, 363
Hpy8I	GTNNAC	7 cut(s)	30, 256, 569, 647, 734, 863, 933
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	4 cut(s)	165, 299, 432, 539
HpyCH4V	TGCA	1 cut(s)	677
HpyF3I	CTNAG	3 cut(s)	88, 245, 832
Hsp92II	CATG	6 cut(s)	359, 445, 554, 606, 781, 972
HspAI	GCGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
LmnI	GCTCC	2 cut(s)	369, 758
MaeI	CTAG	5 cut(s)	213, 363, 653, 797, 858
MaeIII	GTNAC	2 cut(s)	767, 815
MalI	GATC	6 cut(s)	59, 211, 217, 336, 354, 843
MboI	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
MboII	GAAGA	6 cut(s)	159, 305, 407, 483, 488, 931
MflI	RGATCY	3 cut(s)	57, 209, 841
MhlI	GDGCHC	2 cut(s)	374, 662
MluCI	AATT	4 cut(s)	479, 573, 914, 961
MlyI	GAGTC	4 cut(s)	257, 389, 443, 642
MnlI	CCTC	7 cut(s)	48, 103, 109, 359, 475, 649, 947
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	4 cut(s)	131, 136, 309, 704
MvaI	CCWGG	4 cut(s)	131, 136, 309, 704
NdeII	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	6 cut(s)	359, 445, 554, 606, 781, 972
NlaIV	GGNNCC	4 cut(s)	518, 660, 661, 760
NspI	RCATGY	1 cut(s)	781
PciI	ACATGT	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	6, 77
PflFI	GACNNNGTC	1 cut(s)	452
PleI	GAGTC	4 cut(s)	257, 388, 443, 642
PpsI	GAGTC	4 cut(s)	257, 388, 443, 642
PscI	ACATGT	1 cut(s)	777
Psp6I	CCWGG	4 cut(s)	129, 134, 307, 702
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	4 cut(s)	129, 134, 307, 702
PspN4I	GGNNCC	4 cut(s)	518, 660, 661, 760
PspOMI	GGGCCC	1 cut(s)	658
PspPI	GGNCC	4 cut(s)	599, 658, 659, 863
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	3 cut(s)	57, 209, 841
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	3 cut(s)	173, 541, 568
RsaNI	GTAC	3 cut(s)	172, 540, 567
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	848
Sau3AI	GATC	6 cut(s)	57, 209, 215, 334, 352, 841
Sau96I	GGNCC	4 cut(s)	599, 658, 659, 863
SchI	GAGTC	4 cut(s)	257, 389, 443, 642
ScrFI	CCNGG	4 cut(s)	131, 136, 309, 704
SduI	GDGCHC	2 cut(s)	374, 662
SetI	ASST	6 cut(s)	89, 140, 202, 281, 634, 868
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	599, 863
SmiMI	CAYNNNNRTG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	4 cut(s)	479, 573, 914, 961
SsiI	CCGC	2 cut(s)	813, 852
SspMI	CTAG	5 cut(s)	213, 363, 653, 797, 858
StyD4I	CCNGG	4 cut(s)	129, 134, 307, 702
StyI	CCWWGG	2 cut(s)	279, 737
TaaI	ACNGT	4 cut(s)	165, 299, 432, 539
TaqI	TCGA	1 cut(s)	337
TasI	AATT	4 cut(s)	479, 573, 914, 961
TfiI	GAWTC	2 cut(s)	6, 77
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	2 cut(s)	168, 382
TspDTI	ATGAA	2 cut(s)	168, 288
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	168, 382
Tth111I	GACNNNGTC	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	599, 863
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	2 cut(s)	212, 362
XceI	RCATGY	1 cut(s)	781
XspI	CTAG	5 cut(s)	213, 363, 653, 797, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.