FvH4_4g04550

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005395
Physical Location & Seq
Reverse (-)
3893447 .. 3898223
4777 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04550.t1

Sequence Viewer

Length: 846 bp
ATGAAATTCCCCAGGTCATATTCGAAAGGGGGTAAATCACTGTCTTCGTACTTTTCCTACATTATCCCATCTGCAGGCGTTGCTGGATCTAGATCATACAAGTGCGAGCTATCAGTTCCGCTTAGTAATGTCAACTTTGACTCCAAAGATGAAACCTTAGATACATATGAAGACTGTCATTCATCTGGCGAGAACGGGGTAACTGAAAATGATCGAGAAAATGATGATGACCATGCTTCTATTGGGAGCACAAGTGGGTCTGAAGTGTTTGAAGAAGCAACTTTACAGTCAAGTTCAGAAAAGCAGTTGGCATATCTCATGGATGACTCTGTCTTTATCTCCTCAGACTTGCATGAATTCTTGCTTTCTTCTCTTCCTAATATAGTGAAAGGGTGCCAATGGGCACTGCTATACAGTACGGCAAAACATGGTATATCCCTCCGCACACTAATTCGCAAGAGTGCTGAAGTTTCTGGTCCATGTCTGCTGATTGCTGGAGATATGCAAGGTGCTGTATTTGGTGGACTCCTGGAGGCCCCCTTGAAACCAACTGCAAAGAGAAAATATCAAGGAACAAACCAGGCATTTGTTTTCACTACCATATATGGTGAACCAAGGCTATTTAGACCAACTGGAGCCAATCGATACTATTTCATGTGTTTGAATGATCTGCTAGCTTTTGGCGGTGGTGGTAACTTTGCTATATGCTTAGATGGAGATCTGTTAAGCGGAACGAGCGGACCTTGTGAAACATTTGGGAACTTGTGCTTGGCTCATAAACCAGACTTTGAATTGAAGAATGTTGAGCTTTGGGGCTTTACACATGCATCACGGTATCTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

282

Amino Acids

30.61

Weight (kDa)

5.18

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 108 - 273 1.7e-36 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 738
AciI CCGC 5 cut(s) 119, 442, 684, 729, 738
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 2 cut(s) 5, 356
AcuI CTGAAG 2 cut(s) 282, 486
AfaI GTAC 2 cut(s) 50, 418
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 5 cut(s) 272, 544, 664, 791, 796
AjnI CCWGG 3 cut(s) 11, 528, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 3 cut(s) 109, 677, 808
AluI AGCT 3 cut(s) 109, 677, 808
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 534
ApoI RAATTY 2 cut(s) 5, 356
AspS9I GGNCC 3 cut(s) 476, 535, 740
AsuHPI GGTGA 1 cut(s) 620
AsuII TTCGAA 1 cut(s) 23
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 2 cut(s) 476, 740
BaeGI GKGCMC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbsI GAAGAC 2 cut(s) 36, 177
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 2 cut(s) 76, 707
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 3 cut(s) 13, 530, 581
BfaI CTAG 2 cut(s) 90, 674
BfmI CTRYAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 718
Bme1390I CCNGG 3 cut(s) 13, 530, 581
Bme18I GGWCC 2 cut(s) 476, 740
BmgT120I GGNCC 3 cut(s) 476, 535, 740
BmiI GGNNCC 3 cut(s) 395, 537, 637
BmrFI CCNGG 3 cut(s) 13, 530, 581
BmsI GCATC 1 cut(s) 836
BmtI GCTAGC 1 cut(s) 677
BpiI GAAGAC 2 cut(s) 36, 177
BpmI CTGGAG 3 cut(s) 516, 551, 654
Bpu14I TTCGAA 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 643
BsaBI GATNNNNATC 2 cut(s) 91, 717
BsaJI CCNNGG 2 cut(s) 11, 614
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 2 cut(s) 91, 717
BseBI CCWGG 3 cut(s) 13, 530, 581
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 2 cut(s) 11, 614
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 2 cut(s) 91, 717
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 406
BshFI GGCC 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 251, 406
Bsp143I GATC 5 cut(s) 86, 92, 211, 667, 718
BspACI CCGC 5 cut(s) 119, 442, 684, 729, 738
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 1 cut(s) 356
BspDI ATCGAT 1 cut(s) 643
BspLI GGNNCC 3 cut(s) 395, 537, 637
BspMAI CTGCAG 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 393
BsrBI CCGCTC 1 cut(s) 738
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 11, 614
BssMI GATC 5 cut(s) 86, 92, 211, 667, 718
BssT1I CCWWGG 1 cut(s) 614
Bst2UI CCWGG 3 cut(s) 13, 530, 581
Bst4CI ACNGT 5 cut(s) 42, 176, 288, 416, 834
Bst6I CTCTTC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 76, 107, 675
BstDEI CTNAG 4 cut(s) 122, 157, 343, 709
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 5 cut(s) 89, 95, 214, 670, 721
BstMBI GATC 5 cut(s) 86, 92, 211, 667, 718
BstMWI GCNNNNNNNGC 2 cut(s) 80, 735
BstNI CCWGG 3 cut(s) 13, 530, 581
BstNSI RCATGY 1 cut(s) 827
BstSCI CCNGG 3 cut(s) 11, 528, 579
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 406
BstV2I GAAGAC 2 cut(s) 36, 177
BstX2I RGATCY 2 cut(s) 86, 718
BstYI RGATCY 2 cut(s) 86, 718
Bsu15I ATCGAT 1 cut(s) 643
BsuRI GGCC 1 cut(s) 536
BsuTUI ATCGAT 1 cut(s) 643
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 38, 404
Cac8I GCNNGC 3 cut(s) 76, 107, 675
Cfr13I GGNCC 3 cut(s) 476, 535, 740
ClaI ATCGAT 1 cut(s) 643
Csp6I GTAC 2 cut(s) 49, 417
CviAII CATG 7 cut(s) 233, 319, 353, 428, 480, 655, 824
CviJI RGCY 8 cut(s) 109, 536, 619, 638, 677, 773, 808, 816
CviKI_1 RGCY 8 cut(s) 109, 536, 619, 638, 677, 773, 808, 816
CviQI GTAC 2 cut(s) 49, 417
DdeI CTNAG 4 cut(s) 122, 157, 343, 709
DpnI GATC 5 cut(s) 88, 94, 213, 669, 720
DpnII GATC 5 cut(s) 86, 92, 211, 667, 718
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 614
Eco47I GGWCC 2 cut(s) 476, 740
Eco57I CTGAAG 2 cut(s) 282, 486
EcoO109I RGGNCCY 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 11, 528, 579
EcoT14I CCWWGG 1 cut(s) 614
EcoT22I ATGCAT 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 7 cut(s) 236, 322, 356, 431, 483, 658, 827
FatI CATG 7 cut(s) 232, 318, 352, 427, 479, 654, 823
FauNDI CATATG 1 cut(s) 166
FokI GGATG 1 cut(s) 335
FspBI CTAG 2 cut(s) 90, 674
GsuI CTGGAG 3 cut(s) 516, 551, 654
HaeIII GGCC 1 cut(s) 536
Hin1II CATG 7 cut(s) 236, 322, 356, 431, 483, 658, 827
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 140, 326, 525
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 3 cut(s) 133, 524, 611
Hpy188I TCNGA 3 cut(s) 262, 298, 346
Hpy188III TCNNGA 3 cut(s) 90, 215, 843
Hpy8I GTNNAC 3 cut(s) 133, 524, 611
HpyCH4III ACNGT 5 cut(s) 42, 176, 288, 416, 834
HpyCH4V TGCA 5 cut(s) 74, 352, 505, 554, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 735
HpyF3I CTNAG 4 cut(s) 122, 157, 343, 709
Hsp92II CATG 7 cut(s) 236, 322, 356, 431, 483, 658, 827
Kzo9I GATC 5 cut(s) 86, 92, 211, 667, 718
LmnI GCTCC 2 cut(s) 246, 635
LweI GCATC 1 cut(s) 836
MaeI CTAG 2 cut(s) 90, 674
MaeIII GTNAC 2 cut(s) 199, 692
MalI GATC 5 cut(s) 88, 94, 213, 669, 720
MbiI CCGCTC 1 cut(s) 738
MboI GATC 5 cut(s) 86, 92, 211, 667, 718
MboII GAAGA 6 cut(s) 36, 182, 284, 360, 365, 808
MflI RGATCY 2 cut(s) 86, 718
MhlI GDGCHC 2 cut(s) 251, 406
MluCI AATT 4 cut(s) 5, 356, 450, 791
MlyI GAGTC 3 cut(s) 134, 320, 519
MnlI CCTC 3 cut(s) 352, 449, 526
Mph1103I ATGCAT 1 cut(s) 829
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 1 cut(s) 100
MspR9I CCNGG 3 cut(s) 13, 530, 581
MvaI CCWGG 3 cut(s) 13, 530, 581
MwoI GCNNNNNNNGC 2 cut(s) 80, 735
NdeI CATATG 1 cut(s) 166
NdeII GATC 5 cut(s) 86, 92, 211, 667, 718
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 7 cut(s) 236, 322, 356, 431, 483, 658, 827
NlaIV GGNNCC 3 cut(s) 395, 537, 637
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 1 cut(s) 827
NspV TTCGAA 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 528
PleI GAGTC 3 cut(s) 134, 320, 519
PpsI GAGTC 3 cut(s) 134, 320, 519
Psp6I CCWGG 3 cut(s) 11, 528, 579
PspGI CCWGG 3 cut(s) 11, 528, 579
PspN4I GGNNCC 3 cut(s) 395, 537, 637
PspPI GGNCC 3 cut(s) 476, 535, 740
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 86, 718
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 2 cut(s) 50, 418
RsaNI GTAC 2 cut(s) 49, 417
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 1 cut(s) 725
Sau3AI GATC 5 cut(s) 86, 92, 211, 667, 718
Sau96I GGNCC 3 cut(s) 476, 535, 740
SchI GAGTC 3 cut(s) 134, 320, 519
ScrFI CCNGG 3 cut(s) 13, 530, 581
SduI GDGCHC 2 cut(s) 251, 406
SetI ASST 7 cut(s) 17, 111, 158, 511, 679, 745, 810
SfaNI GCATC 1 cut(s) 836
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 2 cut(s) 476, 740
SmiMI CAYNNNNRTG 1 cut(s) 100
Sse9I AATT 4 cut(s) 5, 356, 450, 791
SsiI CCGC 5 cut(s) 119, 442, 684, 729, 738
SspMI CTAG 2 cut(s) 90, 674
StyD4I CCNGG 3 cut(s) 11, 528, 579
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 5 cut(s) 42, 176, 288, 416, 834
TaqI TCGA 3 cut(s) 23, 214, 643
TasI AATT 4 cut(s) 5, 356, 450, 791
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 2 cut(s) 45, 411
TspDTI ATGAA 6 cut(s) 17, 165, 171, 183, 369, 643
TspRI CASTG 2 cut(s) 45, 411
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 476, 740
XapI RAATTY 2 cut(s) 5, 356
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XspI CTAG 2 cut(s) 90, 674
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.