Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367493.1

Orthogroup ID

OG0005395

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 740

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 544 bp

ctgtcttcgtacttttcatccattatcccatctgtaggcggtggtggatctagatcatacgagcaccagcaatcagtcccacttagtaatgtgaactttgactccaaatatgaaaccttggatacatttgaagactgtcattcacctggtgagaacagggaaactgaaaatgatcgagaaaacgatgatgaccatgcttctagagggagcaccagtgagtctgaagtgtttgaagaagcaactttacagcaaagttcagaaaagcaactgtcctatctcatggatgactctgtctttatctcctcagacttgcttgaatttttgctttcttctcttcctaatatagtgaaagggtgccaatgggttttactatacagtacggcaaaacatggtatatcactccgtacactaattcgcaagagcgctgaagtttccggtccatgtctgctgattggtggagatacacaaggtgctgtgtttggtggactcctagagggccccttgaaaccaacggcaaagagaaaatatcaagtaaacatgcttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

181

Amino Acids

19.86

Weight (kDa)

4.72

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05590 AT2G05590
fragaria_vesca	FvH4_4g04550 FvH4_4g04550 FvH4_4g04550 FvH4_5g26940 FvH4_5g26970 FvH4_5g26970
malus_domestica	MD13G1220900.v1.1 MD16G1226000.v1.1
prunus_persica	Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1 Prupe.1G047600_v2.0.a1
pyrus_communis	pycom16g18910
rosa_chinensis	RchiOBHm_Chr4g0395311
rosa_laevigata	RLG00000009630
rosa_multiflora	Rmu_co8367493.1_g000001 Rmu_sc0010817.1_g000031 Rmu_sc0038779.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248050 Rroxscaffold_5G00340220 Rroxscaffold_5G00340240
rosa_rugosa	Rorug03G0358100
rosa_samantha	Rh4AG058400 Rh4BG057200 Rh4CG063000 Rh4DG053900
rosa_wichuraiana	Rw4G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	243, 447
AdeI	CACNNNGTG	2 cut(s)	149, 470
AfaI	GTAC	3 cut(s)	11, 379, 406
AfeI	AGCGCT	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	131, 233, 317, 505
AjnI	CCWGG	1 cut(s)	145
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
Alw21I	GWGCWC	2 cut(s)	66, 212
AlwI	GGATC	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	1 cut(s)	496
ApaI	GGGCCC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	3 cut(s)	437, 496, 497
AsuHPI	GGTGA	2 cut(s)	135, 161
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	66, 212
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	396, 528
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	115
BfaI	CTAG	3 cut(s)	51, 201, 491
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	437, 496, 497
BmiI	GGNNCC	3 cut(s)	356, 498, 499
BmrFI	CCNGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 199, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	17, 289
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	66, 212
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	498
Bsp120I	GGGCCC	1 cut(s)	496
Bsp1286I	GDGCHC	3 cut(s)	66, 212, 500
Bsp143I	GATC	3 cut(s)	47, 53, 172
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	3 cut(s)	356, 498, 499
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	47, 53, 172
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	137, 270, 377
Bst6I	CTCTTC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	83, 304
BstF5I	GGATG	2 cut(s)	17, 289
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	50, 56, 175
BstMBI	GATC	3 cut(s)	47, 53, 172
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	500
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	17, 289
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	437, 496, 497
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	10, 378, 405
CviAII	CATG	5 cut(s)	194, 280, 389, 441, 538
CviJI	RGCY	1 cut(s)	498
CviKI_1	RGCY	1 cut(s)	498
CviQI	GTAC	3 cut(s)	10, 378, 405
DdeI	CTNAG	2 cut(s)	83, 304
DpnI	GATC	3 cut(s)	49, 55, 174
DpnII	GATC	3 cut(s)	47, 53, 172
DraIII	CACNNNGTG	2 cut(s)	149, 470
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	437
Eco47III	AGCGCT	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	243, 447
EcoO109I	RGGNCCY	2 cut(s)	496, 497
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	5 cut(s)	197, 283, 392, 444, 541
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	193, 279, 388, 440, 537
FokI	GGATG	2 cut(s)	4, 296
FriOI	GRGCYC	1 cut(s)	500
FspBI	CTAG	3 cut(s)	51, 201, 491
GlaI	GCGC	1 cut(s)	424
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	197, 283, 392, 444, 541
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	101, 218, 287, 486
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	135, 161
Hpy166II	GTNNAC	4 cut(s)	94, 407, 485, 535
Hpy188I	TCNGA	3 cut(s)	223, 259, 307
Hpy188III	TCNNGA	3 cut(s)	51, 176, 201
Hpy8I	GTNNAC	4 cut(s)	94, 407, 485, 535
HpyCH4III	ACNGT	3 cut(s)	137, 270, 377
HpyF3I	CTNAG	2 cut(s)	83, 304
Hsp92II	CATG	5 cut(s)	197, 283, 392, 444, 541
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	47, 53, 172
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	6 cut(s)	80, 132, 142, 159, 226, 448
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	3 cut(s)	51, 201, 491
MalI	GATC	3 cut(s)	49, 55, 174
MboI	GATC	3 cut(s)	47, 53, 172
MboII	GAAGA	4 cut(s)	143, 245, 321, 326
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	66, 212, 500
MluCI	AATT	2 cut(s)	317, 411
MlyI	GAGTC	4 cut(s)	95, 227, 281, 480
MnlI	CCTC	3 cut(s)	197, 313, 487
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	47, 53, 172
NlaIII	CATG	5 cut(s)	197, 283, 392, 444, 541
NlaIV	GGNNCC	3 cut(s)	356, 498, 499
NspI	RCATGY	1 cut(s)	541
PflFI	GACNNNGTC	1 cut(s)	290
PleI	GAGTC	4 cut(s)	95, 226, 281, 480
PpsI	GAGTC	4 cut(s)	95, 226, 281, 480
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	356, 498, 499
PspOMI	GGGCCC	1 cut(s)	496
PspPI	GGNCC	3 cut(s)	437, 496, 497
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	3 cut(s)	11, 379, 406
RsaNI	GTAC	3 cut(s)	10, 378, 405
Sau3AI	GATC	3 cut(s)	47, 53, 172
Sau96I	GGNCC	3 cut(s)	437, 496, 497
SchI	GAGTC	4 cut(s)	95, 227, 281, 480
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	66, 212, 500
SetI	ASST	3 cut(s)	119, 148, 472
SexAI	ACCWGGT	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	2 cut(s)	317, 411
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	3 cut(s)	51, 201, 491
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	137, 270, 377
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	317, 411
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	6, 126
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	2 cut(s)	50, 200
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	3 cut(s)	51, 201, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.