Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Reverse (-)

3495511 .. 3496398

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07739.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTTTTCAATCTTTTATACTAGGTAATCTAGTATACTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTTTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGACGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTGCGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATTTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATGAAATGCGTAATCTTCGCATTCAATGTGTATTCCCGAATAATCTAATTTTTAAATTATTCAACCATTTAATTTTACCAAGTTCAATGTTAGCCAGATTAGTAAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGTTTGTGTCCGTATGTTACTAGTTGAGTGGGCTTTCCCTTTGTTCCAGTTATTTCTGGTCATGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

199

Amino Acids

23.24

Weight (kDa)

9.51

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	21 - 178	2.6e-103	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	36, 265
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	11, 392, 430, 453
AhlI	ACTAGT	1 cut(s)	547
AluBI	AGCT	3 cut(s)	140, 214, 290
AluI	AGCT	3 cut(s)	140, 214, 290
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	113
ApaI	GGGCCC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	113, 114
AvaI	CYCGRG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	117, 142
Bbv12I	GWGCWC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	4 cut(s)	23, 32, 287, 548
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	113, 114
BmiI	GGNNCC	2 cut(s)	115, 169
BmsI	GCATC	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	574
BseSI	GKGCMC	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	141
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	117, 142
Bsp143I	GATC	2 cut(s)	231, 353
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	230
BspHI	TCATGA	2 cut(s)	216, 588
BspLI	GGNNCC	2 cut(s)	115, 169
BspPI	GGATC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	574
BssMI	GATC	2 cut(s)	231, 353
BssNAI	GTATAC	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	283, 297
Bst6I	CTCTTC	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	234, 356
BstMBI	GATC	2 cut(s)	231, 353
BstMCI	CGRYCG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	230
CciI	TCATGA	2 cut(s)	216, 588
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	113, 114
ClaI	ATCGAT	1 cut(s)	230
CviAII	CATG	3 cut(s)	46, 217, 589
CviJI	RGCY	6 cut(s)	115, 140, 214, 290, 461, 560
CviKI_1	RGCY	6 cut(s)	115, 140, 214, 290, 461, 560
DpnI	GATC	2 cut(s)	233, 355
DpnII	GATC	2 cut(s)	231, 353
DraI	TTTAAA	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	117, 142
Eco53kI	GAGCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	113, 114
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	117, 142
FaeI	CATG	3 cut(s)	49, 220, 592
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	3 cut(s)	45, 216, 588
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	36, 265
FriOI	GRGCYC	2 cut(s)	117, 142
FspBI	CTAG	4 cut(s)	23, 32, 287, 548
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	49, 220, 592
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	3 cut(s)	37, 266, 472
Hpy188I	TCNGA	3 cut(s)	77, 96, 137
Hpy188III	TCNNGA	4 cut(s)	217, 322, 403, 589
Hpy8I	GTNNAC	3 cut(s)	37, 266, 472
HpyAV	CCTTC	4 cut(s)	140, 149, 158, 586
HpyCH4III	ACNGT	2 cut(s)	283, 297
HpyCH4V	TGCA	3 cut(s)	45, 250, 492
Hsp92II	CATG	3 cut(s)	49, 220, 592
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	231, 353
LpnPI	CCDG	6 cut(s)	180, 307, 376, 475, 569, 587
LweI	GCATC	1 cut(s)	479
MaeI	CTAG	4 cut(s)	23, 32, 287, 548
MaeIII	GTNAC	2 cut(s)	511, 543
MalI	GATC	2 cut(s)	233, 355
MboI	GATC	2 cut(s)	231, 353
MboII	GAAGA	7 cut(s)	61, 118, 173, 187, 307, 310, 374
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	117, 142
MluCI	AATT	4 cut(s)	58, 414, 422, 438
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	255, 279
Mph1103I	ATGCAT	1 cut(s)	47
MseI	TTAA	2 cut(s)	420, 437
MslI	CAYNNNNRTG	2 cut(s)	479, 593
Mva1269I	GAATGC	1 cut(s)	387
NdeII	GATC	2 cut(s)	231, 353
NlaIII	CATG	3 cut(s)	49, 220, 592
NlaIV	GGNNCC	2 cut(s)	115, 169
NsiI	ATGCAT	1 cut(s)	47
PagI	TCATGA	2 cut(s)	216, 588
PctI	GAATGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	115, 169
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	113, 114
PsuI	RGATCY	1 cut(s)	353
RseI	CAYNNNNRTG	2 cut(s)	479, 593
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	420, 437
Sau3AI	GATC	2 cut(s)	231, 353
Sau96I	GGNCC	2 cut(s)	113, 114
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	117, 142
SetI	ASST	7 cut(s)	28, 142, 199, 216, 271, 292, 597
SfaNI	GCATC	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	479, 593
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	4 cut(s)	58, 414, 422, 438
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	4 cut(s)	23, 32, 287, 548
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	283, 297
TaqI	TCGA	2 cut(s)	230, 487
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	58, 414, 422, 438
Tru1I	TTAA	2 cut(s)	420, 437
Tru9I	TTAA	2 cut(s)	420, 437
TspDTI	ATGAA	4 cut(s)	62, 214, 299, 384
TspGWI	ACGGA	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	36, 265
XspI	CTAG	4 cut(s)	23, 32, 287, 548
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.