Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Forward (+)

8281799 .. 8282167

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAATGGGTTGGATTGGTATTAGGCTGGATACAGCAAAATAATTCTATTAGATCGAATAAGTACCTTGTGTCAAAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCATCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAAGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACAACTTTCGAAACGAGGGGGACTAAACAGGAACTAGAGGGATCCACAGCAGAAGATCCTTCCCGTTCCCTTTTTTGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACAGAAGAGATCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

122

Amino Acids

14.3

Weight (kDa)

9.59

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	1 - 114	4.8e-51	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	333
AclWI	GGATC	6 cut(s)	276, 289, 290, 325, 338, 354
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	315
AlwI	GGATC	6 cut(s)	276, 289, 290, 325, 338, 354
Aor13HI	TCCGGA	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	249
BamHI	GGATCC	2 cut(s)	281, 330
BciVI	GTATCC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	283, 332
Bpu14I	TTCGAA	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	344
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	53, 281, 295, 330, 359
BspCNI	CTCAG	1 cut(s)	200
BspDI	ATCGAT	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	283, 332
BspPI	GGATC	6 cut(s)	276, 289, 290, 325, 338, 354
BspT104I	TTCGAA	1 cut(s)	249
BssMI	GATC	5 cut(s)	53, 281, 295, 330, 359
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	168, 187
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	5 cut(s)	56, 284, 298, 333, 362
BstMBI	GATC	5 cut(s)	53, 281, 295, 330, 359
BstX2I	RGATCY	4 cut(s)	281, 295, 330, 359
BstYI	RGATCY	4 cut(s)	281, 295, 330, 359
Bsu15I	ATCGAT	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	2 cut(s)	27, 95
CviKI_1	RGCY	2 cut(s)	27, 95
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	168, 187
DpnI	GATC	5 cut(s)	55, 283, 297, 332, 361
DpnII	GATC	5 cut(s)	53, 281, 295, 330, 359
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
FaiI	YATR	1 cut(s)	92
FaqI	GGGAC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	142
FspBI	CTAG	1 cut(s)	275
HapII	CCGG	1 cut(s)	334
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	190, 364
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	153
HpyF3I	CTNAG	2 cut(s)	168, 187
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	53, 281, 295, 330, 359
LpnPI	CCDG	4 cut(s)	13, 139, 254, 347
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	5 cut(s)	55, 283, 297, 332, 361
MboI	GATC	5 cut(s)	53, 281, 295, 330, 359
MboII	GAAGA	5 cut(s)	209, 230, 305, 331, 367
MflI	RGATCY	4 cut(s)	281, 295, 330, 359
MluCI	AATT	3 cut(s)	43, 77, 85
MnlI	CCTC	5 cut(s)	196, 208, 249, 271, 321
MroI	TCCGGA	1 cut(s)	333
MspI	CCGG	1 cut(s)	334
NdeII	GATC	5 cut(s)	53, 281, 295, 330, 359
NlaIV	GGNNCC	2 cut(s)	283, 332
NspV	TTCGAA	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	283, 332
PsuI	RGATCY	4 cut(s)	281, 295, 330, 359
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Sau3AI	GATC	5 cut(s)	53, 281, 295, 330, 359
SetI	ASST	3 cut(s)	69, 128, 188
SfuI	TTCGAA	1 cut(s)	249
SgeI	CNNG	9 cut(s)	40, 80, 108, 138, 267, 281, 287, 315, 346
Sse9I	AATT	3 cut(s)	43, 77, 85
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	56, 97, 249, 344
TasI	AATT	3 cut(s)	43, 77, 85
TfiI	GAWTC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	17, 362
TspGWI	ACGGA	1 cut(s)	209
XapI	RAATTY	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.