Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Reverse (-)

88424970 .. 88425890

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACCGGCAGAATACCGTCACCCATTATTACTAAGAAACTGAAAGAAACCTCAGAAACGGAAGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACAACTTCCGAAACGAGGGGGACTAAACAGGAACAAGAGGGATCCACCGCAGAAGATCCTTCCCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAAACAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

4.54

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	6 - 53	5.7e-26	Ycf1
Ycf1	PF05758	51 - 133	4.3e-34	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	6 cut(s)	285, 298, 299, 335, 348, 364
AfiI	CCNNNNNNNGG	3 cut(s)	97, 264, 325
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	6 cut(s)	285, 298, 299, 335, 348, 364
Ama87I	CYCGRG	1 cut(s)	96
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	1 cut(s)	68
ApaI	GGGCCC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	68, 69
AsuHPI	GGTGA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	2 cut(s)	290, 340
BanII	GRGCYC	2 cut(s)	72, 97
Bbv12I	GWGCWC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	68, 69
BmiI	GGNNCC	4 cut(s)	70, 124, 292, 342
Bsa29I	ATCGAT	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 264, 325
Bse118I	RCCGGY	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	343
BseCI	ATCGAT	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	97, 264, 325
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	150, 344
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	97, 264, 325
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	72, 97
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	290, 304, 340, 369
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	209
BspDI	ATCGAT	1 cut(s)	354
BspEI	TCCGGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	70, 124, 292, 342
BspPI	GGATC	6 cut(s)	285, 298, 299, 335, 348, 364
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	4 cut(s)	290, 304, 340, 369
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	86, 360
BstDEI	CTNAG	2 cut(s)	177, 196
BstKTI	GATC	4 cut(s)	293, 307, 343, 372
BstMBI	GATC	4 cut(s)	290, 304, 340, 369
BstMCI	CGRYCG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	72
BstX2I	RGATCY	4 cut(s)	290, 304, 340, 369
BstYI	RGATCY	4 cut(s)	290, 304, 340, 369
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	68, 69
ClaI	ATCGAT	1 cut(s)	354
CviJI	RGCY	2 cut(s)	70, 95
CviKI_1	RGCY	2 cut(s)	70, 95
DdeI	CTNAG	2 cut(s)	177, 196
DpnI	GATC	4 cut(s)	292, 306, 342, 371
DpnII	GATC	4 cut(s)	290, 304, 340, 369
Eam1104I	CTCTTC	2 cut(s)	86, 360
EarI	CTCTTC	2 cut(s)	86, 360
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	2 cut(s)	72, 97
Eco53kI	GAGCTC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	68, 69
EcoT38I	GRGCYC	2 cut(s)	72, 97
FaiI	YATR	3 cut(s)	42, 65, 104
FaqI	GGGAC	1 cut(s)	283
FriOI	GRGCYC	2 cut(s)	72, 97
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	150, 344
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	150, 344
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	7 cut(s)	32, 51, 92, 199, 259, 328, 374
Hpy188III	TCNNGA	1 cut(s)	344
HpyAV	CCTTC	5 cut(s)	95, 104, 113, 318, 324
HpyCH4III	ACNGT	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	177, 196
Kpn2I	TCCGGA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	290, 304, 340, 369
LpnPI	CCDG	3 cut(s)	163, 263, 357
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	4 cut(s)	292, 306, 342, 371
MboI	GATC	4 cut(s)	290, 304, 340, 369
MflI	RGATCY	4 cut(s)	290, 304, 340, 369
MhlI	GDGCHC	2 cut(s)	72, 97
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	6 cut(s)	82, 205, 217, 258, 280, 331
MroI	TCCGGA	1 cut(s)	343
MspI	CCGG	2 cut(s)	150, 344
NdeII	GATC	4 cut(s)	290, 304, 340, 369
NlaIV	GGNNCC	4 cut(s)	70, 124, 292, 342
NmuCI	GTSAC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	4 cut(s)	70, 124, 292, 342
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	68, 69
PsuI	RGATCY	4 cut(s)	290, 304, 340, 369
SacI	GAGCTC	1 cut(s)	97
Sau3AI	GATC	4 cut(s)	290, 304, 340, 369
Sau96I	GGNCC	2 cut(s)	68, 69
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	72, 97
SetI	ASST	2 cut(s)	97, 197
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	354
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	17, 372
TspGWI	ACGGA	2 cut(s)	218, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.