Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Reverse (-)

123884 .. 129244

Gene Structure 5361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG01130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5361 bp

GTGATGGTTTTTCAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATAAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTTTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGACGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTGCGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATTTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATGAAATGCGTAATCTTCGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGCCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGTCTGGATACAGCAAAATAATTCTATTAGGTCTAATGTAGTTATTAGATCTAATAAGTATAAGTTCCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCATCACCCATTTTTACTAAGAAACTTAAAGGAACCTCAGAAACGGGTGGGACTAAACAGGACCAAGAGGTATCCACCGAAGAAGCTCCTTTTCCTTCTCTTTTTTCGGAAGAAGGGGAAGATCTGGACAAAATCGATGAAATGGAAGAAATCCGAGTGAATGGAAAAGACAAAATTAATAAGGATGATGAATTCCACGTTCGAACATACTATAACTATAAAACTGTTTCTGAAAATCTATATGGAAATAAAGAAAATTCGAATTTAGAATTTTTCAAAATAAAAAAAAAAGAGGATCATTTTTTATGGTTTGAAAAACCATTTGTAACTCTCGTTTTCGATTATAAAAGATGGAATCGACCAAACCGATATATAAAAAATGATAAAATTGAAAATATTGTAAGAAATGAAATGTCACAATATTTTTTTTATACATGCCAAAGTGATGGAAAAGAACGAATATCTTTTACATATCCCCCCAACCTTTCCACCTTTTTTGAAATGATCCAAAAAAGGATACCTTCATTTACAAAAGAAAAAAAAACCTTTGACCAAGTTTCTACTTATTGGAGTTTGATCCATGAAGAAAAAAGGGAAAACTTAAAAAAAGAATTTTTAAATAGAATTGAAGCTTTAGATAAGGAATGGTCTGTTGAAAATATACTGGAAAAAACGACTCGCTTTTGTTATAACGAAGCTAAAAAAGAATATTTACCTAAAATTTATGATCCTTTTTTGCATGGAATCTCTCGGGGAAGAATCAAAAAATTACCTCCATTCCAAATCATAACCGAAACCTATAGAAAAAACAATTTAGGAGGATCCTGGATAAACAAGATTCATGGTCTACTTCTGAAGATTAATTATAAAAAATTTGAGCAAACAATAGAAAAATTTAATAGAAAATCTTTGTCAATAGAGAAAAAACTTTCTTTTTTTTCAGAACCCCAACAAGAAGAAAAAATTAATTCAGAAGAAGAAATCAAAACTTTCAAATTTTTATTTGATATTGTTAGAACTGATAGCAACGATCAAACGCTTATAAAAAATTTTATGGATTTCCCTGAAATCAATAAAAAAGTTCCTCGATGGTCATACAAATTAATAAGTGAGTTGGAAGAATTGGAAGGCGAAAATGAAGAAAATGTACCAATGGAGCCTGGAATTCGTTCAAGAAAAGCAAAACGTGTAGTGGTTTTTACTGATAAAGAGCCACATGGCGAGATTTATACTAATCTCAAAGATAATCAAAATTCTGATCAAAACGATGAAATGGCTTTGATCCGTTATTCGCAACAATCTGATTTTCGTCGAGAGATAATTAAAGGATCCATGCGTTCCCAAAGGCGTAAAACTGTTATTTGGGAATTTTTTCAAGCAAAAGTACATTCCCCCCTTTTTTTTGATAGAATAGATAAACTTTTTTTTTTTTCGTTTGATATATGGGGGCTAAAAAAAAAAATTATTAAAAATTTCATTTGGAAAAAAAAAATTGATAAAAAAGAAGAAGAACAATCAAAAAGAGAAGAAACAAGACGGATAGAAATTGCAGAAACTTGGGATAGCTTCCTATTTGCTCAAATAATAAGAGGTTCTCTCTTAGTAACTCAATCAATTCTTAGAAAATATATTATATTACCTTTATTGATAATAATTAAAAACAGTGTCCGTATGTTATTATTTCAATTTCCCGAGTGGTCCCAGGATTTAAAGGATTGGAAACGTGAAATGCATGTTAAATGTACTTATAATGGGGTTCAACTATCCGAAACAGAATTTCCAAGAAACTGGTTAACGGATGGTATTCAGATAAAAATCCTATTTCCTTTTTATCTTAAACCTTGGCATAAATCTAAATTTCAAGCATCTCAGAAGGCTCGACTAAAAAAAACAAAAGACAAAGGAGAAAAAAATGATTTTTGTTTCTTAACAGTTTGGGGAATGGAAACCGAACTACCGTTTGGTTCTGCCCAAAGAAAGCCTTCTTTTTTTGAACCTATTTCTAAAGAATTAAAAAAAAGAATCAAAAAATTAAAAAAAAAGTCTTTTGTGGTTTTAAAGATTTTCAAAGAAAGAGCACCCATTTTCCTAAAAGTCGCAAAAGAAACTAAAAACTGGATTCTCAAAAACTTTATTTTTATAAAAGGAATTTCAAAACGAAATCTAATTCCATTATTTGGCCCGAGAGAAATATATGAATTAAATGAACCTAAAAAAGATTCAATAATAAGTAATCAGATGATTCATGAACTATCTGTTCAAAATAAATCCTTGGAGTGGACAAATTCTTCACTTAGCGAAAAAAAAATCAAAAATTTGATTGATAGAAAAAAGACAATCAGAAATCAAATAGAAGAAATTTCAAAAGAAAAACAAAACTTAACTAATAGTTGTACCAAACTGCGTTATGATTCTAAAATAATTGAGTCATCAAAAAAAATTTGGCAGACATTCAAAAGAAAAAATACCCGATTAATTCGTAAATCCATTTTTTTTTTTAAATTTTGCATCGAACAAATGTCTATAGCTATTTTTCTAGGTATCATTAATATTCCAAGAATTACTACACAACTTTTTTTTGAATCAACAAAAAAAATTCTTGATAAATATATTTACAAGAATGAAGAAAATGGAGAAAAAAAAAAAAATACTCTTTATTTTATTTCGACTATAAAAAATTTAATATCCAATAAAAAAAAAATGAGTTATGACCTATGCTCTTTATCACAAGCATATGTATTTTACAAATTATCACAAATTAAAGTTAGTAACTTTTGTAAATTAAAGGCTGTTCTTGAATATAACATATGCATAACATCCTTTTTTGTTAAGAATAAAATAAAGGTTTTTTTTCAAGAACACGGAATCTTTCATTATGAATTGAAAAATAAAACCTTTTTGAATTCCGAAGTAAATCAATGGAAAAACTGGTTACGAAGTCAGTATCAATACAATTTACCCCAGATTTCATGGGCTAGATTAGTAACCCAAAATTGGAAAAATAAAATAAATAAAGATTCTCTAGTTCTAAACCCAAGTTTAACCAAAGAGGATTCATATGAAAAAAAGAAATTTGATAATTATAAAAAACAAAAATTTTTTGAGGCCGACTCATTATTAAATCCAAAACATAATGTAAAAAAAGATTCTATATATAATCTTTTTTGCTATAAATCTATTCATTCTACAGAAAAAAATTTTGACATGTCTATAGGCATTGCCCTAGATAATTGTTTAGTCTCTTCTTTTCTAGAAAAATATAATATTCGGGGTATGGGGGAAATTCGGCATAGAAAATATTTGGATTGGAGAATTCTTAACTTTTGGTTTACAAAAAAAGTAACTATTGAGCCTTGGGTTGATACTAAGAGTAAAAAAAAATATATTAATACTAAAGTTCAGAATTATCAAAAAATTGATAAAATAACGCAGACGGATCTTGCTAATAAAAAAAGAAACTTTTTTGATTGGATGGGAATGAATGAAGAAATACTAAATCAGCGTATAACAAATTTTGAATTTTTTTTCTTTCCGGAATTTTTCTTATTTTCTAGTACATATAAAATGAAACCATGGGTCATACCAATCAAATTACTTCTTTTAAATTTTAATGAAAACATAAATGTTAATAAAAAGATCATTCGAAAGAAAAAAGGTTTTATACCATCAAATGAAAAAGAATCCCTTCGATTTTATAATCTGAATAAAGAAGAAAAAGAATCGGCCGGTCAAGTAGAACTTGAATCAGATAAAGAAACAAAAAGAAATCCCGAAGCAGCTCGATTAAACCAAGAAAAAAATATTGAAGAAAATTTTGCAGAATCAACAATAAAAAAACGTAAAAATAAAAAACAATACAAAAGTAATACAGAAGCGGAACTTGATTTATTTCTGACAAGATATTCGCGTTTTCAATTGCGATGGAATTGTTTTTTTAATCAAAAAATTCTCAATAATGTAAAAGTATACTGTCTCTTGGTTAGACTAAACAATCCAAACGAAATAGCGGTATCTTCTATTGAAAGAGGAGAGATGAGCCTAGACATTCTAATGATTGAGAAAAATTTCACTTTTGCAAAATTAATGAAAAAAGGAATATTGATTATTGAACCTGTGCGTTTGTCTGTACAAAACGATGGACAACTTATTATATATAGAACCATAGGTATTTCATTGGTTCATAAAAATAAACACAAAATAAGTAAAAGATACAAAAAAAAAAGCTATATTAATAAAAAATTTTTTGAAAAATCCATTACAAAATATCAAAACAAAACTGTAAATAAAAAAAAAAATAATTATGATTTCTTTGTCCCTGAAAAAATTCTATCCCCTAAACGACGTAGAGAATTTCGAATTCTAATTTGTTTCAACTTAAAAAAAAAAAATGCTAGGGATACAAATTCAAGATTTGATAAGAATATTCAAAACTTGACCACCGTTTTGCATAAAAAGAAAGATCTTGATCTTGATAAGGATAAAAATAACTTAATTAATTTAAAATCCTTTCTTTGGCCCAATTTTAAATTAGAAGATTTAGCTTGTATGAATCGCTATTGGTTTAATACTACTAACGGAAATCATTTCAGTATGATAAGAATACGCATGTATACGCGATTTCCAATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

1786

Amino Acids

213.73

Weight (kDa)

9.75

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	22 - 910	0.0	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	8 cut(s)	1074, 1419, 1596, 1772, 2478, 2870, 3813, 4425
AccB7I	CCANNNNNTGG	1 cut(s)	2906
AccI	GTMKAC	5 cut(s)	268, 711, 1576, 4695, 5339
AccII	CGCG	2 cut(s)	4636, 5344
AccIII	TCCGGA	1 cut(s)	4261
AciI	CCGC	3 cut(s)	209, 4604, 4736
AcoI	YGGCCR	1 cut(s)	4452
AcuI	CTGAAG	1 cut(s)	1604
AfaI	GTAC	6 cut(s)	1878, 2115, 2473, 3124, 4285, 4857
AfiI	CCNNNNNNNGG	5 cut(s)	145, 2906, 3006, 3723, 5241
AflIII	ACRYGT	2 cut(s)	1915, 3933
AjnI	CCWGG	3 cut(s)	1553, 1888, 2430
AjuI	GAANNNNNNNTTGG	2 cut(s)	2673, 2705
Alw21I	GWGCWC	2 cut(s)	145, 2809
Alw26I	GTCTC	2 cut(s)	3973, 4706
Ama87I	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
Aor13HI	TCCGGA	1 cut(s)	4261
AoxI	GGCC	5 cut(s)	116, 2908, 3834, 4452, 5243
ApaI	GGGCCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	4505
ArsI	GACNNNNNNTTYG	4 cut(s)	4615, 4647, 5155, 5187
Asp700I	GAANNNNTTC	6 cut(s)	1897, 2100, 2710, 4413, 4793, 5052
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	6 cut(s)	116, 117, 790, 2427, 2909, 5244
AsuHPI	GGTGA	1 cut(s)	726
AsuII	TTCGAA	4 cut(s)	931, 989, 4372, 5083
AvaI	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
AvaII	GGWCC	2 cut(s)	790, 2427
BaeGI	GKGCMC	1 cut(s)	120
BamHI	GGATCC	2 cut(s)	1550, 2057
BanII	GRGCYC	2 cut(s)	120, 145
BarI	GAAGNNNNNNTAC	2 cut(s)	1860, 1892
Bbv12I	GWGCWC	2 cut(s)	145, 2809
BbvI	GCAGC	1 cut(s)	4517
BccI	CCATC	9 cut(s)	739, 1074, 1169, 1812, 2522, 4195, 4402, 4644, 4859
BciT130I	CCWGG	3 cut(s)	1555, 1890, 2432
BciVI	GTATCC	5 cut(s)	49, 579, 811, 1239, 5119
BclI	TGATCA	1 cut(s)	1987
BcoDI	GTCTC	2 cut(s)	3973, 4706
BfmI	CTRYAG	4 cut(s)	1528, 3252, 3915, 3939
BfuI	GTATCC	5 cut(s)	49, 579, 811, 1239, 5119
BglII	AGATCT	3 cut(s)	626, 850, 5188
BisI	GCNGC	1 cut(s)	4506
BlsI	GCNGC	1 cut(s)	4507
Bme1390I	CCNGG	3 cut(s)	1555, 1890, 2432
Bme18I	GGWCC	2 cut(s)	790, 2427
BmeT110I	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
BmgT120I	GGNCC	6 cut(s)	116, 117, 790, 2427, 2909, 5244
BmiI	GGNNCC	7 cut(s)	118, 172, 763, 1552, 1887, 2059, 2429
BmrFI	CCNGG	3 cut(s)	1555, 1890, 2432
BmsI	GCATC	3 cut(s)	479, 2603, 3246
BplI	GAGNNNNNCTC	4 cut(s)	2310, 2342, 3824, 3856
Bpu14I	TTCGAA	4 cut(s)	931, 989, 4372, 5083
Bsa29I	ATCGAT	2 cut(s)	233, 864
BsaBI	GATNNNNATC	2 cut(s)	2543, 5193
BsaJI	CCNNGG	5 cut(s)	2430, 2570, 3000, 4082, 4301
BsaWI	WCCGGW	1 cut(s)	4261
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 2906, 3006, 3723, 5241
Bse118I	RCCGGY	1 cut(s)	4454
Bse1I	ACTGG	4 cut(s)	1398, 2522, 2849, 3662
Bse3DI	GCAATG	1 cut(s)	3945
Bse8I	GATNNNNATC	2 cut(s)	2543, 5193
BseAI	TCCGGA	1 cut(s)	4261
BseBI	CCWGG	3 cut(s)	1555, 1890, 2432
BseCI	ATCGAT	2 cut(s)	233, 864
BseDI	CCNNGG	5 cut(s)	2430, 2570, 3000, 4082, 4301
BseGI	GGATG	4 cut(s)	919, 2533, 3545, 4206
BseJI	GATNNNNATC	2 cut(s)	2543, 5193
BseLI	CCNNNNNNNGG	5 cut(s)	145, 2906, 3006, 3723, 5241
BseMI	GCAATG	1 cut(s)	3945
BseMII	CTCAG	2 cut(s)	780, 2612
BseNI	ACTGG	4 cut(s)	1398, 2522, 2849, 3662
BseRI	GAGGAG	1 cut(s)	4770
BseSI	GKGCMC	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	4452
BseXI	GCAGC	1 cut(s)	4517
Bsh1236I	CGCG	2 cut(s)	4636, 5344
Bsh1285I	CGRYCG	2 cut(s)	69, 4455
BshFI	GGCC	5 cut(s)	118, 2910, 3836, 4454, 5245
BshVI	ATCGAT	2 cut(s)	233, 864
BsiEI	CGRYCG	2 cut(s)	69, 4455
BsiHKAI	GWGCWC	2 cut(s)	145, 2809
BsiHKCI	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
BsiSI	CCGG	2 cut(s)	4262, 4455
BslFI	GGGAC	4 cut(s)	225, 793, 2413, 5027
BslI	CCNNNNNNNGG	5 cut(s)	145, 2906, 3006, 3723, 5241
BsmAI	GTCTC	2 cut(s)	3973, 4706
BsmFI	GGGAC	4 cut(s)	225, 793, 2413, 5027
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	5 cut(s)	118, 2910, 3836, 4454, 5245
BsoBI	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
Bsp119I	TTCGAA	4 cut(s)	931, 989, 4372, 5083
Bsp120I	GGGCCC	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	120, 145, 2809
Bsp13I	TCCGGA	1 cut(s)	4261
Bsp1407I	TGTACA	1 cut(s)	4855
Bsp19I	CCATGG	1 cut(s)	4301
BspACI	CCGC	3 cut(s)	209, 4604, 4736
BspANI	GGCC	5 cut(s)	118, 2910, 3836, 4454, 5245
BspCNI	CTCAG	2 cut(s)	779, 2611
BspDI	ATCGAT	2 cut(s)	233, 864
BspEI	TCCGGA	1 cut(s)	4261
BspFNI	CGCG	2 cut(s)	4636, 5344
BspHI	TCATGA	3 cut(s)	219, 555, 2974
BspLI	GGNNCC	7 cut(s)	118, 172, 763, 1552, 1887, 2059, 2429
BspT104I	TTCGAA	4 cut(s)	931, 989, 4372, 5083
BsrDI	GCAATG	1 cut(s)	3945
BsrFI	RCCGGY	1 cut(s)	4454
BsrGI	TGTACA	1 cut(s)	4855
BsrI	ACTGG	4 cut(s)	1398, 2522, 2849, 3662
BssAI	RCCGGY	1 cut(s)	4454
BssECI	CCNNGG	5 cut(s)	2430, 2570, 3000, 4082, 4301
BssNAI	GTATAC	2 cut(s)	4696, 5340
BssT1I	CCWWGG	4 cut(s)	2570, 3000, 4082, 4301
Bst1107I	GTATAC	2 cut(s)	4696, 5340
Bst2UI	CCWGG	3 cut(s)	1555, 1890, 2432
Bst6I	CTCTTC	2 cut(s)	134, 3976
BstAUI	TGTACA	1 cut(s)	4855
BstBI	TTCGAA	4 cut(s)	931, 989, 4372, 5083
BstDEI	CTNAG	7 cut(s)	747, 766, 2329, 2348, 2598, 3023, 4095
BstDSI	CCRYGG	1 cut(s)	4301
BstF5I	GGATG	4 cut(s)	919, 2533, 3545, 4206
BstFNI	CGCG	2 cut(s)	4636, 5344
BstHHI	GCGC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	3973, 4706
BstMCI	CGRYCG	2 cut(s)	69, 4455
BstNI	CCWGG	3 cut(s)	1555, 1890, 2432
BstNSI	RCATGY	4 cut(s)	1167, 2465, 3937, 5338
BstSCI	CCNGG	3 cut(s)	1553, 1888, 2430
BstSFI	CTRYAG	4 cut(s)	1528, 3252, 3915, 3939
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	4636, 5344
BstV1I	GCAGC	1 cut(s)	4517
BstX2I	RGATCY	7 cut(s)	353, 626, 850, 1550, 2057, 4165, 5188
BstXI	CCANNNNNNTGG	2 cut(s)	1175, 2517
BstYI	RGATCY	7 cut(s)	353, 626, 850, 1550, 2057, 4165, 5188
BstZ17I	GTATAC	2 cut(s)	4696, 5340
BstZI	CGGCCG	1 cut(s)	4452
Bsu15I	ATCGAT	2 cut(s)	233, 864
BsuI	GTATCC	5 cut(s)	49, 579, 811, 1239, 5119
BsuRI	GGCC	5 cut(s)	118, 2910, 3836, 4454, 5245
BsuTUI	ATCGAT	2 cut(s)	233, 864
BtgI	CCRYGG	1 cut(s)	4301
BtgZI	GCGATG	1 cut(s)	4663
BtsCI	GGATG	4 cut(s)	919, 2533, 3545, 4206
BtsIMutI	CAGTG	1 cut(s)	2398
CciI	TCATGA	3 cut(s)	219, 555, 2974
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	4454
Cfr13I	GGNCC	6 cut(s)	116, 117, 790, 2427, 2909, 5244
ClaI	ATCGAT	2 cut(s)	233, 864
Csp6I	GTAC	6 cut(s)	1877, 2114, 2472, 3123, 4284, 4856
CspCI	CAANNNNNGTGG	2 cut(s)	1207, 1242
CviQI	GTAC	6 cut(s)	1877, 2114, 2472, 3123, 4284, 4856
DdeI	CTNAG	7 cut(s)	747, 766, 2329, 2348, 2598, 3023, 4095
DraI	TTTAAA	7 cut(s)	1347, 2439, 2787, 3229, 4332, 5229, 5254
EaeI	YGGCCR	1 cut(s)	4452
EagI	CGGCCG	1 cut(s)	4452
Eam1104I	CTCTTC	2 cut(s)	134, 3976
EarI	CTCTTC	2 cut(s)	134, 3976
Ecl136II	GAGCTC	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	4452
Eco130I	CCWWGG	4 cut(s)	2570, 3000, 4082, 4301
Eco24I	GRGCYC	2 cut(s)	120, 145
Eco47I	GGWCC	2 cut(s)	790, 2427
Eco52I	CGGCCG	1 cut(s)	4452
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	1604
Eco88I	CYCGRG	4 cut(s)	144, 1479, 2420, 2911
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	116, 117
EcoRI	GAATTC	5 cut(s)	920, 1893, 3631, 4041, 5085
EcoRII	CCWGG	3 cut(s)	1553, 1888, 2430
EcoT14I	CCWWGG	4 cut(s)	2570, 3000, 4082, 4301
EcoT22I	ATGCAT	3 cut(s)	50, 2463, 3542
EcoT38I	GRGCYC	2 cut(s)	120, 145
ErhI	CCWWGG	4 cut(s)	2570, 3000, 4082, 4301
FaqI	GGGAC	4 cut(s)	225, 793, 2413, 5027
FauI	CCCGC	1 cut(s)	202
FauNDI	CATATG	3 cut(s)	3463, 3536, 3787
FbaI	TGATCA	1 cut(s)	1987
FblI	GTMKAC	5 cut(s)	268, 711, 1576, 4695, 5339
Fnu4HI	GCNGC	1 cut(s)	4506
FokI	GGATG	4 cut(s)	926, 2540, 3532, 4213
FriOI	GRGCYC	2 cut(s)	120, 145
Fsp4HI	GCNGC	1 cut(s)	4506
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	4506
HaeIII	GGCC	5 cut(s)	118, 2910, 3836, 4454, 5245
HapII	CCGG	2 cut(s)	4262, 4455
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	472, 2523
HindII	GTYRAC	2 cut(s)	472, 2523
HindIII	AAGCTT	1 cut(s)	1359
HpaI	GTTAAC	1 cut(s)	2523
HpaII	CCGG	2 cut(s)	4262, 4455
HphI	GGTGA	1 cut(s)	726
Hpy166II	GTNNAC	9 cut(s)	269, 472, 712, 1577, 2523, 3009, 4059, 4696, 5340
Hpy8I	GTNNAC	9 cut(s)	269, 472, 712, 1577, 2523, 3009, 4059, 4696, 5340
Hpy99I	CGWCG	2 cut(s)	2043, 5073
HpyCH4IV	ACGT	5 cut(s)	927, 1915, 2452, 4567, 5071
HpyF3I	CTNAG	7 cut(s)	747, 766, 2329, 2348, 2598, 3023, 4095
HpySE526I	ACGT	5 cut(s)	927, 1915, 2452, 4567, 5071
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	4261
Ksp22I	TGATCA	1 cut(s)	1987
KspAI	GTTAAC	1 cut(s)	2523
LmnI	GCTCC	2 cut(s)	820, 1885
Lsp1109I	GCAGC	1 cut(s)	4517
LweI	GCATC	3 cut(s)	479, 2603, 3246
MaeII	ACGT	5 cut(s)	927, 1915, 2452, 4567, 5071
MaeIII	GTNAC	9 cut(s)	511, 542, 1054, 1143, 2332, 3497, 3660, 3712, 4069
MfeI	CAATTG	1 cut(s)	4643
MflI	RGATCY	7 cut(s)	353, 626, 850, 1550, 2057, 4165, 5188
MhlI	GDGCHC	3 cut(s)	120, 145, 2809
MlyI	GAGTC	4 cut(s)	75, 1399, 3164, 3833
MmeI	TCCRAC	3 cut(s)	58, 547, 1824
Mph1103I	ATGCAT	3 cut(s)	50, 2463, 3542
MroI	TCCGGA	1 cut(s)	4261
MroXI	GAANNNNTTC	6 cut(s)	1897, 2100, 2710, 4413, 4793, 5052
MslI	CAYNNNNRTG	2 cut(s)	479, 4778
MspI	CCGG	2 cut(s)	4262, 4455
MspR9I	CCNGG	3 cut(s)	1555, 1890, 2432
MunI	CAATTG	1 cut(s)	4643
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	1555, 1890, 2432
MvnI	CGCG	2 cut(s)	4636, 5344
NcoI	CCATGG	1 cut(s)	4301
NdeI	CATATG	3 cut(s)	3463, 3536, 3787
NlaIV	GGNNCC	7 cut(s)	118, 172, 763, 1552, 1887, 2059, 2429
NmuCI	GTSAC	2 cut(s)	542, 1143
NsiI	ATGCAT	3 cut(s)	50, 2463, 3542
NspI	RCATGY	4 cut(s)	1167, 2465, 3937, 5338
NspV	TTCGAA	4 cut(s)	931, 989, 4372, 5083
PacI	TTAATTAA	1 cut(s)	5223
PagI	TCATGA	3 cut(s)	219, 555, 2974
PciI	ACATGT	1 cut(s)	3933
PcsI	WCGNNNNNNNCGW	1 cut(s)	1093
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	6 cut(s)	1897, 2100, 2710, 4413, 4793, 5052
PflMI	CCANNNNNTGG	1 cut(s)	2906
PfoI	TCCNGGA	1 cut(s)	1553
PkrI	GCNGC	1 cut(s)	4507
PleI	GAGTC	4 cut(s)	75, 1399, 3163, 3833
PpsI	GAGTC	4 cut(s)	75, 1399, 3163, 3833
PscI	ACATGT	1 cut(s)	3933
PsiI	TTATAA	8 cut(s)	1074, 1419, 1596, 1772, 2478, 2870, 3813, 4425
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	1553, 1888, 2430
PspGI	CCWGG	3 cut(s)	1553, 1888, 2430
PspN4I	GGNNCC	7 cut(s)	118, 172, 763, 1552, 1887, 2059, 2429
PspOMI	GGGCCC	1 cut(s)	116
PspPI	GGNCC	6 cut(s)	116, 117, 790, 2427, 2909, 5244
PsuI	RGATCY	7 cut(s)	353, 626, 850, 1550, 2057, 4165, 5188
RsaI	GTAC	6 cut(s)	1878, 2115, 2473, 3124, 4285, 4857
RsaNI	GTAC	6 cut(s)	1877, 2114, 2472, 3123, 4284, 4856
RseI	CAYNNNNRTG	2 cut(s)	479, 4778
SacI	GAGCTC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	4506
Sau96I	GGNCC	6 cut(s)	116, 117, 790, 2427, 2909, 5244
SchI	GAGTC	4 cut(s)	75, 1399, 3164, 3833
ScrFI	CCNGG	3 cut(s)	1555, 1890, 2432
SduI	GDGCHC	3 cut(s)	120, 145, 2809
SfaNI	GCATC	3 cut(s)	479, 2603, 3246
SfcI	CTRYAG	4 cut(s)	1528, 3252, 3915, 3939
SfuI	TTCGAA	4 cut(s)	931, 989, 4372, 5083
SinI	GGWCC	2 cut(s)	790, 2427
SmiMI	CAYNNNNRTG	2 cut(s)	479, 4778
SsiI	CCGC	3 cut(s)	209, 4604, 4736
SspI	AATATT	9 cut(s)	1126, 1151, 1439, 3280, 3994, 4028, 4531, 4827, 5152
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	3 cut(s)	1553, 1888, 2430
StyI	CCWWGG	4 cut(s)	2570, 3000, 4082, 4301
TaiI	ACGT	5 cut(s)	930, 1918, 2455, 4570, 5074
TaqII	GACCGA	1 cut(s)	55
TatI	WGTACW	4 cut(s)	2113, 2471, 4283, 4855
TscAI	CASTG	1 cut(s)	2398
TseFI	GTSAC	2 cut(s)	542, 1143
TseI	GCWGC	1 cut(s)	4505
Tsp45I	GTSAC	2 cut(s)	542, 1143
TspGWI	ACGGA	7 cut(s)	2003, 2281, 2387, 2540, 3606, 4178, 5319
TspRI	CASTG	1 cut(s)	2398
Van91I	CCANNNNNTGG	1 cut(s)	2906
VpaK11BI	GGWCC	2 cut(s)	790, 2427
XbaI	TCTAGA	1 cut(s)	3979
XceI	RCATGY	4 cut(s)	1167, 2465, 3937, 5338
XmiI	GTMKAC	5 cut(s)	268, 711, 1576, 4695, 5339
XmnI	GAANNNNTTC	6 cut(s)	1897, 2100, 2710, 4413, 4793, 5052
Zsp2I	ATGCAT	3 cut(s)	50, 2463, 3542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.