Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00544

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Reverse (-)

892 .. 2010

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATTTTAAAATCTTTTATACTAGGGAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACCGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATTCAATGCGTAATCTTAGCATTCAATGTTTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGGCTGGATACAGCAAAATAATTCTATTAGATCTAATGTACTTATTAGATCGAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAAGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACAACTTCCGAAACGAGAGGGACTAAACAGGAACAAGAGGGATCCACCGCAGAAGATCCTTCCCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCTACTTTAAAGAGACACGCTATAAAAATAGACCCGTTTATGAAACTTATTATCTGGATGGGAATCAAGAACAAGAAAATTCGAAGTTACAAATATTTAAAGAAAAAAAAGATCTCTTCCGATTTGAAAAACCCGTTGTGTTGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

372

Amino Acids

43.32

Weight (kDa)

6.69

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	21 - 372	3.6e-221	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	265, 702
AccIII	TCCGGA	1 cut(s)	904
AciI	CCGC	1 cut(s)	858
AclWI	GGATC	7 cut(s)	358, 846, 859, 860, 896, 909, 925
AcsI	RAATTY	4 cut(s)	364, 655, 965, 1045
AfaI	GTAC	2 cut(s)	615, 635
AfiI	CCNNNNNNNGG	2 cut(s)	142, 886
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	369, 389, 419, 427, 450, 1094
AluBI	AGCT	3 cut(s)	140, 214, 290
AluI	AGCT	3 cut(s)	140, 214, 290
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	974
AlwI	GGATC	7 cut(s)	358, 846, 859, 860, 896, 909, 925
Ama87I	CYCGRG	1 cut(s)	141
Aor13HI	TCCGGA	1 cut(s)	904
AoxI	GGCC	1 cut(s)	113
ApaI	GGGCCC	1 cut(s)	117
ApoI	RAATTY	4 cut(s)	364, 655, 965, 1045
AsiGI	ACCGGT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	113, 114
AsuHPI	GGTGA	1 cut(s)	717
AsuII	TTCGAA	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	117
BamHI	GGATCC	2 cut(s)	851, 901
BanII	GRGCYC	2 cut(s)	117, 142
Bbv12I	GWGCWC	1 cut(s)	142
BccI	CCATC	1 cut(s)	1019
BciVI	GTATCC	2 cut(s)	46, 576
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	4 cut(s)	23, 32, 254, 287
BfuI	GTATCC	2 cut(s)	46, 576
BglII	AGATCT	2 cut(s)	605, 1078
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	113, 114
BmiI	GGNNCC	4 cut(s)	115, 169, 853, 903
BmsI	GCATC	2 cut(s)	259, 476
Bpu14I	TTCGAA	1 cut(s)	1049
Bsa29I	ATCGAT	2 cut(s)	230, 915
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaWI	WCCGGW	2 cut(s)	194, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 886
Bse118I	RCCGGY	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	1029
BseAI	TCCGGA	1 cut(s)	904
BseCI	ATCGAT	2 cut(s)	230, 915
BseGI	GGATG	2 cut(s)	967, 1030
BseJI	GATNNNNATC	1 cut(s)	1029
BseLI	CCNNNNNNNGG	2 cut(s)	142, 886
BseMII	CTCAG	1 cut(s)	771
BseSI	GKGCMC	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	194
BshVI	ATCGAT	2 cut(s)	230, 915
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	195, 905
BslFI	GGGAC	2 cut(s)	222, 844
BslI	CCNNNNNNNGG	2 cut(s)	142, 886
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	2 cut(s)	222, 844
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	117, 142
Bsp13I	TCCGGA	1 cut(s)	904
Bsp143I	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
BspACI	CCGC	1 cut(s)	858
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	770
BspDI	ATCGAT	2 cut(s)	230, 915
BspEI	TCCGGA	1 cut(s)	904
BspHI	TCATGA	2 cut(s)	216, 552
BspLI	GGNNCC	4 cut(s)	115, 169, 853, 903
BspPI	GGATC	7 cut(s)	358, 846, 859, 860, 896, 909, 925
BspT104I	TTCGAA	1 cut(s)	1049
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
Bst4CI	ACNGT	3 cut(s)	283, 297, 723
Bst6I	CTCTTC	3 cut(s)	131, 921, 1088
BstBI	TTCGAA	1 cut(s)	1049
BstDEI	CTNAG	3 cut(s)	380, 738, 757
BstF5I	GGATG	2 cut(s)	967, 1030
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	9 cut(s)	234, 353, 608, 626, 854, 868, 904, 933, 1081
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
BstMCI	CGRYCG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	117
BstX2I	RGATCY	7 cut(s)	350, 605, 851, 865, 901, 930, 1078
BstYI	RGATCY	7 cut(s)	350, 605, 851, 865, 901, 930, 1078
Bsu15I	ATCGAT	2 cut(s)	230, 915
BsuI	GTATCC	2 cut(s)	46, 576
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	2 cut(s)	230, 915
BtsCI	GGATG	2 cut(s)	967, 1030
CciI	TCATGA	2 cut(s)	216, 552
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	113, 114
ClaI	ATCGAT	2 cut(s)	230, 915
Csp6I	GTAC	2 cut(s)	614, 634
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	3 cut(s)	46, 217, 553
CviJI	RGCY	6 cut(s)	115, 140, 214, 290, 579, 665
CviKI_1	RGCY	6 cut(s)	115, 140, 214, 290, 579, 665
CviQI	GTAC	2 cut(s)	614, 634
DdeI	CTNAG	3 cut(s)	380, 738, 757
DpnI	GATC	9 cut(s)	233, 352, 607, 625, 853, 867, 903, 932, 1080
DpnII	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
DraI	TTTAAA	3 cut(s)	9, 976, 1066
Eam1104I	CTCTTC	3 cut(s)	131, 921, 1088
EarI	CTCTTC	3 cut(s)	131, 921, 1088
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	117, 142
Eco53kI	GAGCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	113, 114
EcoRI	GAATTC	1 cut(s)	965
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	117, 142
FaeI	CATG	3 cut(s)	49, 220, 556
FaqI	GGGAC	2 cut(s)	222, 844
FatI	CATG	3 cut(s)	45, 216, 552
FblI	GTMKAC	2 cut(s)	265, 702
FokI	GGATG	2 cut(s)	974, 1037
FriOI	GRGCYC	2 cut(s)	117, 142
FspBI	CTAG	4 cut(s)	23, 32, 254, 287
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	195, 905
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	49, 220, 556
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	4 cut(s)	28, 78, 669, 1030
HpaII	CCGG	2 cut(s)	195, 905
HphI	GGTGA	1 cut(s)	717
Hpy166II	GTNNAC	3 cut(s)	266, 469, 703
Hpy188III	TCNNGA	7 cut(s)	217, 319, 400, 553, 905, 1022, 1034
Hpy8I	GTNNAC	3 cut(s)	266, 469, 703
HpyAV	CCTTC	5 cut(s)	140, 149, 158, 879, 885
HpyCH4III	ACNGT	3 cut(s)	283, 297, 723
HpyCH4V	TGCA	3 cut(s)	45, 250, 489
HpyF3I	CTNAG	3 cut(s)	380, 738, 757
Hsp92II	CATG	3 cut(s)	49, 220, 556
HspAI	GCGC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	904
Kzo9I	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
LpnPI	CCDG	9 cut(s)	208, 304, 373, 413, 565, 709, 824, 918, 1007
LweI	GCATC	2 cut(s)	259, 476
MaeI	CTAG	4 cut(s)	23, 32, 254, 287
MaeIII	GTNAC	5 cut(s)	508, 539, 723, 733, 1053
MalI	GATC	9 cut(s)	233, 352, 607, 625, 853, 867, 903, 932, 1080
MboI	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
MflI	RGATCY	7 cut(s)	350, 605, 851, 865, 901, 930, 1078
MhlI	GDGCHC	2 cut(s)	117, 142
MluCI	AATT	9 cut(s)	58, 364, 419, 534, 595, 647, 655, 965, 1045
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	55, 544
MnlI	CCTC	8 cut(s)	127, 255, 279, 766, 778, 821, 841, 892
Mph1103I	ATGCAT	1 cut(s)	47
MroI	TCCGGA	1 cut(s)	904
MseI	TTAA	4 cut(s)	8, 533, 975, 1065
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	2 cut(s)	195, 905
Mva1269I	GAATGC	1 cut(s)	384
NdeII	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
NlaIII	CATG	3 cut(s)	49, 220, 556
NlaIV	GGNNCC	4 cut(s)	115, 169, 853, 903
NmuCI	GTSAC	2 cut(s)	539, 723
NsiI	ATGCAT	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	1049
PagI	TCATGA	2 cut(s)	216, 552
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	28, 669, 1030
PinAI	ACCGGT	1 cut(s)	194
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	142
PspN4I	GGNNCC	4 cut(s)	115, 169, 853, 903
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	113, 114
PsuI	RGATCY	7 cut(s)	350, 605, 851, 865, 901, 930, 1078
RsaI	GTAC	2 cut(s)	615, 635
RsaNI	GTAC	2 cut(s)	614, 634
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	4 cut(s)	8, 533, 975, 1065
Sau3AI	GATC	9 cut(s)	231, 350, 605, 623, 851, 865, 901, 930, 1078
Sau96I	GGNCC	2 cut(s)	113, 114
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	117, 142
SetI	ASST	7 cut(s)	142, 216, 271, 292, 639, 698, 758
SfaNI	GCATC	2 cut(s)	259, 476
SfuI	TTCGAA	1 cut(s)	1049
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	9 cut(s)	58, 364, 419, 534, 595, 647, 655, 965, 1045
SsiI	CCGC	1 cut(s)	858
SspI	AATATT	1 cut(s)	1062
SspMI	CTAG	4 cut(s)	23, 32, 254, 287
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	283, 297, 723
TaqI	TCGA	6 cut(s)	230, 484, 626, 667, 915, 1049
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	9 cut(s)	58, 364, 419, 534, 595, 647, 655, 965, 1045
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	3 cut(s)	28, 669, 1030
Tru1I	TTAA	4 cut(s)	8, 533, 975, 1065
Tru9I	TTAA	4 cut(s)	8, 533, 975, 1065
TseFI	GTSAC	2 cut(s)	539, 723
Tsp45I	GTSAC	2 cut(s)	539, 723
TspDTI	ATGAA	9 cut(s)	62, 214, 299, 424, 541, 569, 933, 978, 1023
TspGWI	ACGGA	2 cut(s)	779, 938
XapI	RAATTY	4 cut(s)	364, 655, 965, 1045
XmiI	GTMKAC	2 cut(s)	265, 702
XspI	CTAG	4 cut(s)	23, 32, 254, 287
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.