Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Forward (+)

50347 .. 64609

Gene Structure 14263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12397g00110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACCGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGTGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTTTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATTCAATGCGTAATCTTAGCATTCAATGGTTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGGTTGGTATTAGGCTGGATACAGCAAAATAATTCTATTAGATCTAATGTACTTATTAGATCTAATAAGTACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

214

Amino Acids

24.76

Weight (kDa)

9.96

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	2 cut(s)	615, 635
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	369, 389, 419, 427, 450
AluBI	AGCT	3 cut(s)	140, 214, 290
AluI	AGCT	3 cut(s)	140, 214, 290
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	113
ApaI	GGGCCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	364
AsiGI	ACCGGT	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	113, 114
AvaI	CYCGRG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	117, 142
Bbv12I	GWGCWC	1 cut(s)	142
BciVI	GTATCC	2 cut(s)	46, 576
BfaI	CTAG	4 cut(s)	23, 32, 254, 287
BfuI	GTATCC	2 cut(s)	46, 576
BglII	AGATCT	2 cut(s)	605, 623
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	113, 114
BmiI	GGNNCC	2 cut(s)	115, 169
BmsI	GCATC	2 cut(s)	259, 476
Bsa29I	ATCGAT	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	115
BshTI	ACCGGT	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	141
Bsp120I	GGGCCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	117, 142
Bsp143I	GATC	4 cut(s)	231, 350, 605, 623
BspANI	GGCC	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	230
BspHI	TCATGA	2 cut(s)	216, 552
BspLI	GGNNCC	2 cut(s)	115, 169
BspPI	GGATC	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	4 cut(s)	231, 350, 605, 623
Bst4CI	ACNGT	2 cut(s)	283, 297
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	380
BstKTI	GATC	4 cut(s)	234, 353, 608, 626
BstMBI	GATC	4 cut(s)	231, 350, 605, 623
BstMCI	CGRYCG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	117
BstX2I	RGATCY	3 cut(s)	350, 605, 623
BstYI	RGATCY	3 cut(s)	350, 605, 623
Bsu15I	ATCGAT	1 cut(s)	230
BsuI	GTATCC	2 cut(s)	46, 576
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	230
CciI	TCATGA	2 cut(s)	216, 552
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	113, 114
ClaI	ATCGAT	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	614, 634
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	3 cut(s)	46, 217, 553
CviJI	RGCY	5 cut(s)	115, 140, 214, 290, 579
CviKI_1	RGCY	5 cut(s)	115, 140, 214, 290, 579
CviQI	GTAC	2 cut(s)	614, 634
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	4 cut(s)	233, 352, 607, 625
DpnII	GATC	4 cut(s)	231, 350, 605, 623
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	117, 142
Eco53kI	GAGCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	113, 114
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	117, 142
FaeI	CATG	3 cut(s)	49, 220, 556
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	3 cut(s)	45, 216, 552
FblI	GTMKAC	1 cut(s)	265
FriOI	GRGCYC	2 cut(s)	117, 142
FspBI	CTAG	4 cut(s)	23, 32, 254, 287
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	49, 220, 556
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	266, 469
Hpy188I	TCNGA	4 cut(s)	77, 96, 137, 461
Hpy188III	TCNNGA	4 cut(s)	217, 319, 400, 553
Hpy8I	GTNNAC	2 cut(s)	266, 469
HpyAV	CCTTC	3 cut(s)	140, 149, 158
HpyCH4III	ACNGT	2 cut(s)	283, 297
HpyCH4V	TGCA	3 cut(s)	45, 250, 489
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	49, 220, 556
Kzo9I	GATC	4 cut(s)	231, 350, 605, 623
LpnPI	CCDG	5 cut(s)	208, 304, 373, 413, 565
LweI	GCATC	2 cut(s)	259, 476
MaeI	CTAG	4 cut(s)	23, 32, 254, 287
MaeIII	GTNAC	2 cut(s)	508, 539
MalI	GATC	4 cut(s)	233, 352, 607, 625
MboI	GATC	4 cut(s)	231, 350, 605, 623
MboII	GAAGA	6 cut(s)	61, 118, 164, 173, 187, 307
MflI	RGATCY	3 cut(s)	350, 605, 623
MhlI	GDGCHC	2 cut(s)	117, 142
MluCI	AATT	5 cut(s)	58, 364, 419, 534, 595
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	127, 255, 279
Mph1103I	ATGCAT	1 cut(s)	47
MseI	TTAA	2 cut(s)	8, 533
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	384
NdeII	GATC	4 cut(s)	231, 350, 605, 623
NlaIII	CATG	3 cut(s)	49, 220, 556
NlaIV	GGNNCC	2 cut(s)	115, 169
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	47
PagI	TCATGA	2 cut(s)	216, 552
PctI	GAATGC	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	194
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	115, 169
PspOMI	GGGCCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	113, 114
PsuI	RGATCY	3 cut(s)	350, 605, 623
RsaI	GTAC	2 cut(s)	615, 635
RsaNI	GTAC	2 cut(s)	614, 634
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	8, 533
Sau3AI	GATC	4 cut(s)	231, 350, 605, 623
Sau96I	GGNCC	2 cut(s)	113, 114
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	117, 142
SetI	ASST	6 cut(s)	28, 142, 216, 271, 292, 639
SfaNI	GCATC	2 cut(s)	259, 476
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	58, 364, 419, 534, 595
SspMI	CTAG	4 cut(s)	23, 32, 254, 287
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	283, 297
TaqI	TCGA	2 cut(s)	230, 484
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	5 cut(s)	58, 364, 419, 534, 595
TatI	WGTACW	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	8, 533
Tru9I	TTAA	2 cut(s)	8, 533
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	6 cut(s)	62, 214, 299, 424, 541, 569
XapI	RAATTY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	4 cut(s)	23, 32, 254, 287
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.