Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Forward (+)

38605631 .. 38605933

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1298900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCATGAAGATAATCAATTCGTTCGTTATGGTCAGACTCTTTTTGAATTTTTGAACACATTCTCCATAGGGCCTTCTTATTTGTTCCTTCTCCGAGTTGGGGTTATGGAAGAAGTAAAAGAAGGAACCAAGAAGAAAGTATTGGCAACAACCGATTTCGTTACGGGACAACTCTTGATATTCATATCGATCTATTATGTACCTTTGCATCTAGCATTAGACAATAACTGTCATAGCTTTACCATATTTTTTTGTTTCATTTCTTCTGAAACAATAACACACACTTTTTTATTATGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

101

Amino Acids

11.55

Weight (kDa)

5.69

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	15 - 82	1.9e-27	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	47, 55
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	127
BssMI	GATC	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	230
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	2 cut(s)	73, 237
CviKI_1	RGCY	2 cut(s)	73, 237
CviQI	GTAC	1 cut(s)	200
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FaiI	YATR	9 cut(s)	6, 30, 68, 107, 185, 198, 234, 245, 295
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	4
FspBI	CTAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	36, 95, 268
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	84, 98, 116
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	4, 208
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	189
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	20, 122, 145, 255
MluCI	AATT	2 cut(s)	17, 47
MlyI	GAGTC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	59
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	31
SetI	ASST	2 cut(s)	205, 239
SfaNI	GCATC	1 cut(s)	217
SgeI	CNNG	6 cut(s)	17, 107, 142, 177, 187, 224
Sse9I	AATT	2 cut(s)	17, 47
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	17, 47
TspDTI	ATGAA	3 cut(s)	21, 172, 247
XapI	RAATTY	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.