AT2G12880

zinc ion binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
5291523 .. 5291882
360 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12880.1

Sequence Viewer

Length: 360 bp
ATGGCTCCTAAATTCACACTAAATCAAGAGAGAGACAATGATCGAGAAAGAACAAGGGCGAGCTATAACAATGATAGGAGGAGAAACGATTATGATCCAAGGGCATGTTACAAGTGTGGAAAATTGGGACATTTCGCACGATCTTGCCATGTGGTTACCCAACCAACGACGGCATATATCACATGCTATTTCTGCAGCGAAGAAGGGCATCGTTCCAATGGATGTCCGAATAAGAGAACGGACCAAGTGAATCCGAAGGGCCATTGTTATTGGTGCGGAAATCAAGACCATCGTTTCAATTTGATTATTTGGAGGTCAAGATGTCTCTTTAGACTAATGAAACCTAAATATGCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

14.2

Weight (kDa)

9.47

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 11
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 27, 329
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 241, 259
AvaII GGWCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 27, 329
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 259
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 27, 329
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 40, 94, 140
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 197
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 3 cut(s) 40, 94, 140
BssT1I CCWWGG 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 3 cut(s) 43, 97, 143
BstMAI GTCTC 2 cut(s) 27, 329
BstMBI GATC 3 cut(s) 40, 94, 140
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 2 cut(s) 108, 186
BstPI GGTNACC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 241, 259
CviAII CATG 3 cut(s) 105, 149, 183
CviJI RGCY 3 cut(s) 5, 63, 261
CviKI_1 RGCY 3 cut(s) 5, 63, 261
DpnI GATC 3 cut(s) 42, 96, 142
DpnII GATC 3 cut(s) 40, 94, 140
Eco130I CCWWGG 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 108, 152, 186
FaiI YATR 8 cut(s) 66, 93, 106, 150, 175, 177, 184, 351
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 104, 148, 182
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 3 cut(s) 108, 152, 186
HinfI GANTC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 228, 255
Hpy188III TCNNGA 4 cut(s) 26, 44, 284, 318
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 197, 250
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 108, 152, 186
Kzo9I GATC 3 cut(s) 40, 94, 140
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 107, 154
MalI GATC 3 cut(s) 42, 96, 142
MboI GATC 3 cut(s) 40, 94, 140
MboII GAAGA 1 cut(s) 212
MluCI AATT 3 cut(s) 11, 122, 298
MnlI CCTC 2 cut(s) 72, 306
MseI TTAA 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 3 cut(s) 40, 94, 140
NlaIII CATG 3 cut(s) 108, 152, 186
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 108, 186
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 241, 259
PstI CTGCAG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 40, 94, 140
Sau96I GGNCC 2 cut(s) 241, 259
SetI ASST 3 cut(s) 65, 317, 346
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 241
Sse9I AATT 3 cut(s) 11, 122, 298
SsiI CCGC 1 cut(s) 276
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 11, 122, 298
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 11
XceI RCATGY 2 cut(s) 108, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.