AT3G43490

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005730
Physical Location & Seq
Forward (+)
15398859 .. 15400079
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43490.1

Sequence Viewer

Length: 783 bp
ATGCCGCCGAAGCGTAAAGATATAAACTTTCTTTTTGATGACGGAGAAGATACAGTTGCCATTATAGATGATGAAGCTAATGAAGATCTAAGATTGAAGATATTAGAGAAAGCTTTTTCGAGGCGTAATGTTGATAACAAGCTTGATTCTGATCTCTCCTTCGATCCTGGTGTAGTTAGTACTGTGATGGTTAATGGAGGAAAGTCGGAGGAAGTTAAAAACTCTAAGAGTAATAAGAAGATGAAGAGAAATAAGCTTGAAGCTGCCAATGAAATTGTAACCCATTGTGTGGAAAGACAAGATGAGGATAACATGGTGGAGGATGTAGTAAGAGGTGAAGAAGAAGATGGAGAAACAACTAGCAATTCGGTTATGACAAAGCTTCTTCGTGGAGCAAGATACTTTGACCCTCTTGATGCTGGTTGGGTAACTTGTTATAGCTGTGGGGAGAAAGATCATATAACTGTTAGTTGTCCAACTCTTACCAATTGTAGGAAGTCGTGCTTTATATGCGCTAGTTTGGAGCATGGTGCAAGACAGTGTACAAAGGTATGGGACATTGATGCAAACCTCGGAATCCACCAAGACAAGACTCAAAGATTCAAAGGTAAACTATGCGGAAGTGGTGATGATGATGAAGTAACCGATTTGATGTTGAATCCACAACACCGAGGGCTAGAGAATATGATCCAAGGGCTATTCCTCGCGAGGATCAGAGACTACACGAAACCTAAGTGGTTTGATTCCACAAACTACCTAGAACTCGCAAGAACAATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

260

Amino Acids

29.48

Weight (kDa)

5.12

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 289
AccII CGCG 1 cut(s) 707
AciI CCGC 2 cut(s) 5, 618
AclWI GGATC 3 cut(s) 158, 682, 719
AfaI GTAC 2 cut(s) 181, 544
AfiI CCNNNNNNNGG 2 cut(s) 289, 492
AgsI TTSAA 4 cut(s) 97, 260, 604, 658
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 7 cut(s) 77, 113, 142, 256, 263, 382, 441
AluI AGCT 7 cut(s) 77, 113, 142, 256, 263, 382, 441
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 3 cut(s) 158, 682, 719
ApeKI GCWGC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 347, 638
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 181, 341
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 4 cut(s) 360, 516, 677, 758
BglII AGATCT 1 cut(s) 85
BisI GCNGC 2 cut(s) 5, 264
BlsI GCNGC 2 cut(s) 6, 265
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 406, 553
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 571, 670, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 492
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 571, 670, 691
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 289, 492
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 289, 492
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 1 cut(s) 569
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 6 cut(s) 85, 151, 163, 454, 687, 711
Bsp68I TCGCGA 1 cut(s) 707
BspACI CCGC 2 cut(s) 5, 618
BspFNI CGCG 1 cut(s) 707
BspPI GGATC 3 cut(s) 158, 682, 719
BsrGI TGTACA 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 571, 670, 691
BssMI GATC 6 cut(s) 85, 151, 163, 454, 687, 711
BssT1I CCWWGG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 4 cut(s) 55, 184, 466, 540
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 542
BstDEI CTNAG 3 cut(s) 89, 225, 732
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 707
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 6 cut(s) 88, 154, 166, 457, 690, 714
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 6 cut(s) 85, 151, 163, 454, 687, 711
BstMWI GCNNNNNNNGC 2 cut(s) 10, 510
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 707
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 545
BtuMI TCGCGA 1 cut(s) 707
CfoI GCGC 1 cut(s) 515
Csp6I GTAC 2 cut(s) 180, 543
CviAII CATG 2 cut(s) 313, 527
CviJI RGCY 9 cut(s) 77, 113, 142, 256, 263, 382, 441, 676, 697
CviKI_1 RGCY 9 cut(s) 77, 113, 142, 256, 263, 382, 441, 676, 697
CviQI GTAC 2 cut(s) 180, 543
DdeI CTNAG 3 cut(s) 89, 225, 732
DpnI GATC 6 cut(s) 87, 153, 165, 456, 689, 713
DpnII GATC 6 cut(s) 85, 151, 163, 454, 687, 711
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 691
FaeI CATG 2 cut(s) 316, 530
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 1 cut(s) 569
FatI CATG 2 cut(s) 312, 526
Fnu4HI GCNGC 2 cut(s) 5, 264
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 5, 264
FspBI CTAG 4 cut(s) 360, 516, 677, 758
GlaI GCGC 1 cut(s) 514
GluI GCNGC 2 cut(s) 5, 264
HhaI GCGC 1 cut(s) 515
Hin1II CATG 2 cut(s) 316, 530
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HindIII AAGCTT 4 cut(s) 111, 140, 254, 380
HinfI GANTC 6 cut(s) 146, 576, 592, 600, 658, 743
HphI GGTGA 2 cut(s) 347, 638
Hpy166II GTNNAC 2 cut(s) 543, 611
Hpy188I TCNGA 4 cut(s) 151, 208, 575, 716
Hpy188III TCNNGA 2 cut(s) 413, 706
Hpy8I GTNNAC 2 cut(s) 543, 611
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 55, 184, 466, 540
HpyCH4V TGCA 2 cut(s) 533, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 510
HpyF3I CTNAG 3 cut(s) 89, 225, 732
Hsp92II CATG 2 cut(s) 316, 530
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 6 cut(s) 85, 151, 163, 454, 687, 711
LmnI GCTCC 2 cut(s) 392, 523
LpnPI CCDG 3 cut(s) 153, 180, 405
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 406, 553
MaeI CTAG 4 cut(s) 360, 516, 677, 758
MaeIII GTNAC 3 cut(s) 277, 427, 640
MalI GATC 6 cut(s) 87, 153, 165, 456, 689, 713
MboI GATC 6 cut(s) 85, 151, 163, 454, 687, 711
MboII GAAGA 9 cut(s) 59, 95, 109, 250, 256, 350, 353, 356, 377
MfeI CAATTG 1 cut(s) 487
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 273, 364, 487
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 2 cut(s) 186, 500
MseI TTAA 2 cut(s) 192, 216
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 10, 510
NdeII GATC 6 cut(s) 85, 151, 163, 454, 687, 711
NlaIII CATG 2 cut(s) 316, 530
NruI TCGCGA 1 cut(s) 707
PfeI GAWTC 5 cut(s) 146, 576, 600, 658, 743
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 2 cut(s) 6, 265
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 85
RruI TCGCGA 1 cut(s) 707
RsaI GTAC 2 cut(s) 181, 544
RsaNI GTAC 2 cut(s) 180, 543
SaqAI TTAA 2 cut(s) 192, 216
SatI GCNGC 2 cut(s) 5, 264
Sau3AI GATC 6 cut(s) 85, 151, 163, 454, 687, 711
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 1 cut(s) 168
SfaNI GCATC 2 cut(s) 406, 553
Sse9I AATT 3 cut(s) 273, 364, 487
SsiI CCGC 2 cut(s) 5, 618
SspMI CTAG 4 cut(s) 360, 516, 677, 758
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 4 cut(s) 55, 184, 466, 540
TaqI TCGA 2 cut(s) 119, 162
TasI AATT 3 cut(s) 273, 364, 487
TatI WGTACW 2 cut(s) 179, 542
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 5 cut(s) 146, 576, 600, 658, 743
Tru1I TTAA 2 cut(s) 192, 216
Tru9I TTAA 2 cut(s) 192, 216
TscAI CASTG 1 cut(s) 545
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 5 cut(s) 87, 96, 257, 285, 651
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 545
Van91I CCANNNNNTGG 1 cut(s) 289
XspI CTAG 4 cut(s) 360, 516, 677, 758
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.