RLG00000014842

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005730
Physical Location & Seq
Forward (+)
58267406 .. 58270432
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014842

Sequence Viewer

Length: 1125 bp
ATGTATCAGGTGATTCCTGCTAAAGAAGAAGTGAAGGTAGACGCAGCTAGAGCTTTGGATGAGCCAATTGAACTGAACACTGTTCAGATCACTGACAATATCGTGCTGCGGAAACTTCTTCGGGGACCAAGGTATTTTGATCCTCCAGATAGGAGCTGGGGAACATGCTTTAATTGTGGTGAAGAAGGACATGCAGCAGTGAACTGTACCTTAGCTAAGCGGAAGAAGCCGTGCTTTGTTTGTGGCAGTTTGGAGCACAATGCCAAGCAATGTGAAAAGGGACAAGATTGCTTTATCTGCAAAAAAGGTGGACATCATGCTAAAAATTGTCCAGAGAAGTACAATGTTGGCTCATTGGATTCCAAAATATGTTTAAAATGTGGAGACTCTGGGCATGAGATGTATTCATGCAAGAATGATTACCCATCTGATGACCTCAAGGAAATACAATGTTATGTCTGCAAGAGATTTGGTCATTTATGTTGTGTCAAGTGTGTTGATAACAGTCTAAAGGAAGTATCTTGTTACAAATGTGGTCAACTGGGACACACTGGTATGGCATGCATAGGCTTACGTGGTGGGGAAACCACCGTTTCTGGATCCCCTCGTTTATGCTACAAGTGTGGTGAAGGTGGTCATATTGCTCGGGAATGCAGAACTTCCAATAATGCTCGTAAGAGGTATGGCGAGTTCTCTAACGTACATACTCCTTTGAGACCTCATAAAGAAAAGAAAGACTACATGGGATTTTATTCTGCTCCTAATGATCTGAATAAGAATAAATGGAAACATACTTACTATGATGAAAGAGGTTTTGCAACTCCACAAAAAGCAAAACATAGAGGTGGATGGATAGTTGATGATCCAGATGACTTCTCCCCTAGAAAAGGCAAGCAGAACGGCTGGAAAGCTCCTGCAACACCATCTAGTAGGAGCCATAGGATTTCAAGTTCGCCTGCAGGCGGTCATGCTTCGAGTTCTAGATCCTCCAAAAAGTTGTGGAAGGTTCCTGGAGGAACTCCTATCTCTCAAGGAGAATCCAAGCCTGTTCAGCACAGATATTCTGCACGGAGGTTTAGCAACTCTGGCACTGATGGTGTTAGACGAAACAACGAGTGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

375

Amino Acids

41.82

Weight (kDa)

9.2

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 204 - 219 2.8e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AciI CCGC 3 cut(s) 109, 220, 963
AclWI GGATC 5 cut(s) 134, 594, 607, 857, 978
AfaI GTAC 3 cut(s) 208, 341, 702
AfiI CCNNNNNNNGG 2 cut(s) 887, 962
AgsI TTSAA 2 cut(s) 71, 948
AjnI CCWGG 1 cut(s) 1009
AloI GAACNNNNNNTCC 2 cut(s) 934, 966
AluBI AGCT 5 cut(s) 47, 53, 156, 215, 911
AluI AGCT 5 cut(s) 47, 53, 156, 215, 911
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 378, 709
AlwI GGATC 5 cut(s) 134, 594, 607, 857, 978
Ama87I CYCGRG 1 cut(s) 645
ApeKI GCWGC 3 cut(s) 44, 106, 194
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 22, 191, 638
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 56, 93, 206
BccI CCATC 4 cut(s) 433, 843, 931, 1088
BceAI ACGGC 2 cut(s) 214, 916
BciT130I CCWGG 1 cut(s) 1011
BcoDI GTCTC 2 cut(s) 378, 709
BfaI CTAG 4 cut(s) 48, 882, 927, 981
BfmI CTRYAG 1 cut(s) 957
BisI GCNGC 3 cut(s) 45, 107, 195
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 3 cut(s) 46, 108, 196
Bme1390I CCNGG 1 cut(s) 1011
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 4 cut(s) 126, 601, 935, 1008
BmrFI CCNGG 1 cut(s) 1011
BmrI ACTGGG 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 551
BpmI CTGGAG 2 cut(s) 129, 1032
Bpu10I CCTNAGC 1 cut(s) 211
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 422, 1014
BsaAI YACGTR 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 709
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 887, 962
Bse1I ACTGG 2 cut(s) 546, 556
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 1011
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 64, 854
BseLI CCNNNNNNNGG 2 cut(s) 887, 962
BseMI GCAATG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 546, 556
BseXI GCAGC 3 cut(s) 56, 93, 206
BseYI CCCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 1050
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 645
BslFI GGGAC 3 cut(s) 138, 294, 558
BslI CCNNNNNNNGG 2 cut(s) 887, 962
BsmAI GTCTC 2 cut(s) 378, 709
BsmFI GGGAC 3 cut(s) 138, 294, 558
BsmI GAATGC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 709
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 6 cut(s) 87, 139, 599, 766, 862, 983
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 3 cut(s) 109, 220, 963
BspLI GGNNCC 4 cut(s) 126, 601, 935, 1008
BspMAI CTGCAG 1 cut(s) 961
BspPI GGATC 5 cut(s) 134, 594, 607, 857, 978
BspTNI GGTCTC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 2 cut(s) 546, 556
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 6 cut(s) 87, 139, 599, 766, 862, 983
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 4 cut(s) 82, 206, 506, 592
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 4 cut(s) 562, 893, 957, 961
BstDEI CTNAG 2 cut(s) 211, 216
BstENI CCTNNNNNAGG 1 cut(s) 885
BstF5I GGATG 2 cut(s) 64, 854
BstKTI GATC 6 cut(s) 90, 142, 602, 769, 865, 986
BstMAI GTCTC 2 cut(s) 378, 709
BstMBI GATC 6 cut(s) 87, 139, 599, 766, 862, 983
BstMWI GCNNNNNNNGC 5 cut(s) 50, 226, 297, 1051, 1086
BstNI CCWGG 1 cut(s) 1011
BstNSI RCATGY 3 cut(s) 168, 194, 564
BstSCI CCNGG 1 cut(s) 1009
BstSFI CTRYAG 1 cut(s) 957
BstV1I GCAGC 3 cut(s) 56, 93, 206
BstX2I RGATCY 2 cut(s) 599, 983
BstYI RGATCY 2 cut(s) 599, 983
BtsCI GGATG 2 cut(s) 64, 854
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 5 cut(s) 78, 90, 204, 549, 1089
Cac8I GCNNGC 4 cut(s) 562, 893, 957, 961
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 207, 340, 701
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 8 cut(s) 165, 191, 317, 395, 408, 561, 742, 968
CviQI GTAC 3 cut(s) 207, 340, 701
DdeI CTNAG 2 cut(s) 211, 216
DpnI GATC 6 cut(s) 89, 141, 601, 768, 864, 985
DpnII GATC 6 cut(s) 87, 139, 599, 766, 862, 983
DraI TTTAAA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 8 cut(s) 168, 194, 320, 398, 411, 564, 745, 971
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 3 cut(s) 138, 294, 558
FatI CATG 8 cut(s) 164, 190, 316, 394, 407, 560, 741, 967
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 45, 107, 195
FokI GGATG 2 cut(s) 71, 861
Fsp4HI GCNGC 3 cut(s) 45, 107, 195
FspBI CTAG 4 cut(s) 48, 882, 927, 981
GluI GCNGC 3 cut(s) 45, 107, 195
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 2 cut(s) 129, 1032
HgaI GACGC 1 cut(s) 50
Hin1II CATG 8 cut(s) 168, 194, 320, 398, 411, 564, 745, 971
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HinfI GANTC 4 cut(s) 13, 359, 386, 1037
HphI GGTGA 3 cut(s) 22, 191, 638
Hpy166II GTNNAC 4 cut(s) 40, 202, 311, 539
Hpy188I TCNGA 3 cut(s) 87, 430, 771
Hpy188III TCNNGA 6 cut(s) 146, 332, 597, 647, 866, 981
Hpy8I GTNNAC 4 cut(s) 40, 202, 311, 539
HpyAV CCTTC 4 cut(s) 28, 179, 623, 997
HpyCH4III ACNGT 4 cut(s) 82, 206, 506, 592
HpyCH4IV ACGT 2 cut(s) 574, 699
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 226, 297, 1051, 1086
HpyF3I CTNAG 2 cut(s) 211, 216
HpySE526I ACGT 2 cut(s) 574, 699
Hsp92II CATG 8 cut(s) 168, 194, 320, 398, 411, 564, 745, 971
Kzo9I GATC 6 cut(s) 87, 139, 599, 766, 862, 983
LmnI GCTCC 5 cut(s) 153, 253, 763, 916, 933
Lsp1109I GCAGC 3 cut(s) 56, 93, 206
MaeI CTAG 4 cut(s) 48, 882, 927, 981
MaeII ACGT 2 cut(s) 574, 699
MaeIII GTNAC 1 cut(s) 524
MalI GATC 6 cut(s) 89, 141, 601, 768, 864, 985
MboI GATC 6 cut(s) 87, 139, 599, 766, 862, 983
MboII GAAGA 4 cut(s) 38, 110, 194, 235
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 2 cut(s) 599, 983
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 3 cut(s) 66, 172, 325
MlyI GAGTC 1 cut(s) 380
Mph1103I ATGCAT 1 cut(s) 566
MseI TTAA 2 cut(s) 171, 374
MslI CAYNNNNRTG 2 cut(s) 554, 843
MspR9I CCNGG 1 cut(s) 1011
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 1 cut(s) 1011
MwoI GCNNNNNNNGC 5 cut(s) 50, 226, 297, 1051, 1086
NdeII GATC 6 cut(s) 87, 139, 599, 766, 862, 983
NlaIII CATG 8 cut(s) 168, 194, 320, 398, 411, 564, 745, 971
NlaIV GGNNCC 4 cut(s) 126, 601, 935, 1008
NsiI ATGCAT 1 cut(s) 566
NspI RCATGY 3 cut(s) 168, 194, 564
PaeI GCATGC 1 cut(s) 564
PctI GAATGC 1 cut(s) 656
PfeI GAWTC 3 cut(s) 13, 359, 1037
PfoI TCCNGGA 1 cut(s) 1009
PkrI GCNGC 3 cut(s) 46, 108, 196
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 1009
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 1009
PspN4I GGNNCC 4 cut(s) 126, 601, 935, 1008
PspPI GGNCC 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 674, 706
PstI CTGCAG 1 cut(s) 961
PsuI RGATCY 2 cut(s) 599, 983
RsaI GTAC 3 cut(s) 208, 341, 702
RsaNI GTAC 3 cut(s) 207, 340, 701
RseI CAYNNNNRTG 2 cut(s) 554, 843
SaqAI TTAA 2 cut(s) 171, 374
SatI GCNGC 3 cut(s) 45, 107, 195
Sau3AI GATC 6 cut(s) 87, 139, 599, 766, 862, 983
Sau96I GGNCC 1 cut(s) 125
SbfI CCTGCAGG 1 cut(s) 961
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 1011
SdaI CCTGCAGG 1 cut(s) 961
SduI GDGCHC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 554, 843
SmlI CTYRAG 2 cut(s) 437, 1029
SmoI CTYRAG 2 cut(s) 437, 1029
SphI GCATGC 1 cut(s) 564
Sse8387I CCTGCAGG 1 cut(s) 961
Sse9I AATT 3 cut(s) 66, 172, 325
SsiI CCGC 3 cut(s) 109, 220, 963
SspMI CTAG 4 cut(s) 48, 882, 927, 981
StyD4I CCNGG 1 cut(s) 1009
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 4 cut(s) 82, 206, 506, 592
TaiI ACGT 2 cut(s) 577, 702
TaqI TCGA 1 cut(s) 974
TasI AATT 3 cut(s) 66, 172, 325
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 3 cut(s) 13, 359, 1037
Tru1I TTAA 2 cut(s) 171, 374
Tru9I TTAA 2 cut(s) 171, 374
TscAI CASTG 5 cut(s) 85, 97, 204, 556, 1096
TseI GCWGC 3 cut(s) 44, 106, 194
TspDTI ATGAA 2 cut(s) 396, 819
TspGWI ACGGA 1 cut(s) 1084
TspRI CASTG 5 cut(s) 85, 97, 204, 556, 1096
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 885
XbaI TCTAGA 1 cut(s) 980
XceI RCATGY 3 cut(s) 168, 194, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 4 cut(s) 48, 882, 927, 981
Zsp2I ATGCAT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.