Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005730

Physical Location & Seq

Genomic Coordinates Reverse (-)

15655148 .. 15657252

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGAAGTTTCCTGTTACAAATGTGGTTCAATGGGACATACTGGTATGGCCCTTCCTTTTCTTACTTTTGTCTAAGAAAGGGGATTCTGTACATGCAGGCATGCGTAAGCTTACGTGGTGGGGAAACCACTGGTTTTGGTTCGCCTCGGTTATGCTACAAGTGTGGTGAAGGTGGTCATATTGCTCGTGAATGTGCAAGTTTGGTCAATGTTCACAAAAGATTTGGGGAATCATCTAATTATTCTACTCCAGTTTTGAAACGCCATAAGGAAAAGAGAGACTACACGGGATTCAAGTCTGCTCCTCATGACCTAAATAAGGTCCATAAAAGGAAACAGACCCAATTTGAAGAAAGAGTTTTTACAACACCACAAAAGGCAAAACATAGATGTGGCTGGATAATGGATGATCCAGGGGACTTTTCCCCTAGAAAAGGCAAAAAGAACAATAGGAAGTCTCCGGTAACACCATCTAATCGGGGTCATAGGGTTCCTAGTTTAACTGCAGGTGGTCATGCTTCAAGTTCTAGATCCTCTAAAAAGATTTGGGAGGATTCCAAAAGCCCCATCTCAAAAGGGTCGTCGAAGTCTTTTCAGCACGGATATTCTGCATCGAGGTTTAACAACTCTAATGGTGGTGGATATAGAAGAAATTATGATTGGATAGGTGATGAATATAATGGGCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC

Protein Analysis

231

Amino Acids

26.08

Weight (kDa)

9.94

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12880 AT3G43490 AT3G43503 AT3G43590 AT5G36240
fragaria_vesca	FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241
malus_domestica	MD03G1161300.v1.1
prunus_persica	Prupe.6G179900_v2.0.a1 Prupe.6G179900_v2.0.a1
pyrus_communis	pycom03g11370 pycom11g15120
rosa_chinensis	RchiOBHm_Chr6g0255381
rosa_laevigata	RLG00000003331 RLG00000014842
rosa_multiflora	Rmu_sc0025504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210030
rosa_rugosa	Rorug05G0557800 Rorug05G0557800 Rorug05G0557900 Rorug05G0558000.1
rosa_samantha	Rh6AG075400 Rh6BG068200 Rh6CG067900 Rh6DG064500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	497
AclWI	GGATC	2 cut(s)	404, 525
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	319, 434
AgsI	TTSAA	5 cut(s)	31, 259, 295, 350, 522
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	643, 675
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	273, 462
AlwI	GGATC	2 cut(s)	404, 525
AoxI	GGCC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AspS9I	GGNCC	2 cut(s)	50, 322
AsuHPI	GGTGA	2 cut(s)	179, 680
AvaII	GGWCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	186
BccI	CCATC	2 cut(s)	478, 575
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	273, 462
BfaI	CTAG	3 cut(s)	429, 495, 528
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	50, 322
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	146, 413
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 434
Bse1I	ACTGG	3 cut(s)	47, 136, 251
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	146, 413
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	319, 434
BseNI	ACTGG	3 cut(s)	47, 136, 251
BseRI	GAGGAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	49, 431
BslI	CCNNNNNNNGG	2 cut(s)	319, 434
BsmAI	GTCTC	2 cut(s)	273, 462
BsmFI	GGGAC	2 cut(s)	49, 431
BsnI	GGCC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	409, 530
BspANI	GGCC	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	404, 525
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	47, 136, 251
BssECI	CCNNGG	2 cut(s)	146, 413
BssMI	GATC	2 cut(s)	409, 530
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	414
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	99, 103
BstDEI	CTNAG	1 cut(s)	74
BstENI	CCTNNNNNAGG	2 cut(s)	317, 432
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	412, 533
BstMAI	GTCTC	2 cut(s)	273, 462
BstMBI	GATC	2 cut(s)	409, 530
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	2 cut(s)	97, 105
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	2 cut(s)	99, 103
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	50, 322
Csp6I	GTAC	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	4 cut(s)	94, 102, 308, 515
CviJI	RGCY	4 cut(s)	51, 111, 396, 564
CviKI_1	RGCY	4 cut(s)	51, 111, 396, 564
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	411, 532
DpnII	GATC	2 cut(s)	409, 530
Eco47I	GGWCC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	2 cut(s)	317, 432
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	97, 105, 311, 518
FaqI	GGGAC	2 cut(s)	49, 431
FatI	CATG	4 cut(s)	93, 101, 307, 514
FokI	GGATG	1 cut(s)	419
FspBI	CTAG	3 cut(s)	429, 495, 528
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	4 cut(s)	97, 105, 311, 518
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	4 cut(s)	85, 230, 291, 554
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	179, 680
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	188, 308, 528
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	2 cut(s)	63, 164
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	97, 197, 506, 611
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	97, 105, 311, 518
Kzo9I	GATC	2 cut(s)	409, 530
LmnI	GCTCC	1 cut(s)	307
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	3 cut(s)	429, 495, 528
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	15, 463
MalI	GATC	2 cut(s)	411, 532
MboI	GATC	2 cut(s)	409, 530
MboII	GAAGA	2 cut(s)	362, 660
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	3 cut(s)	238, 344, 652
MnlI	CCTC	5 cut(s)	156, 315, 544, 544, 609
MseI	TTAA	2 cut(s)	500, 621
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	409, 530
NlaIII	CATG	4 cut(s)	97, 105, 311, 518
NlaIV	GGNNCC	1 cut(s)	492
NspI	RCATGY	2 cut(s)	97, 105
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	497
PfeI	GAWTC	4 cut(s)	85, 230, 291, 554
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	50, 322
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	500, 621
Sau3AI	GATC	2 cut(s)	409, 530
Sau96I	GGNCC	2 cut(s)	50, 322
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	8 cut(s)	113, 118, 175, 315, 324, 511, 620, 670
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	390
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	3 cut(s)	238, 344, 652
SspMI	CTAG	3 cut(s)	429, 495, 528
StyD4I	CCNGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	584, 614
TasI	AATT	3 cut(s)	238, 344, 652
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	85, 230, 291, 554
Tru1I	TTAA	2 cut(s)	500, 621
Tru9I	TTAA	2 cut(s)	500, 621
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	2 cut(s)	317, 432
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	2 cut(s)	97, 105
XspI	CTAG	3 cut(s)	429, 495, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.