pycom03g11370

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0005730
Physical Location & Seq
Reverse (-)
11087553 .. 11089103
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11370.2

Sequence Viewer

Length: 453 bp
ATGATATGTTCTCATGCAGGAATGATTATTCAACTGATGATCTTAAGGAAATCCAATGCTACGTCTGCAAGAGATTTGGTCATTTATGTTGTGTCAAGTATGTTGACACTAGTCCATGGGAAGTTTCCTGTTACAAATGTGGTTCAATGGGACATACTGGTATGTTTCCTGCCTATGTCCAGAAGAGGGTTCACATTCTATTTTTCTGCTTCCATTTCACCGAAACGCCCTTCCTTTTTTTACTTTTGTCGAAGAAAGGGGATTCTGTACACGCAGGCATGTGTAAGCTTACGTGATGGGGAAACCACTGGTTTTGGAACACCTCGGTTATGCTACAAGTGTGGTGAAGGTGGTCATATTGCTCGTGAATGCGCAAGTTTGGTCAATGTTCACAAAAAATTTGGGGAATTACCTAATTTTTCTACTCCAGTTTTGAAACGTATAAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

151

Amino Acids

16.93

Weight (kDa)

9.95

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 373
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 186
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 3 cut(s) 32, 146, 436
AhlI ACTAGT 1 cut(s) 109
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 210, 356
BauI CACGAG 1 cut(s) 363
BccI CCATC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 43
BoxI GACNNNNGTC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 115, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 162, 313, 428
BseDI CCNNGG 2 cut(s) 115, 323
BseLI CCNNNNNNNGG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 162, 313, 428
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 3 cut(s) 162, 313, 428
BssECI CCNNGG 2 cut(s) 115, 323
BssMI GATC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 178
BstAFI CTTAAG 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 282
BstPAI GACNNNNGTC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 268
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 3 cut(s) 14, 116, 279
CviJI RGCY 1 cut(s) 288
CviKI_1 RGCY 1 cut(s) 288
CviQI GTAC 1 cut(s) 268
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 17, 119, 282
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 13, 115, 278
FspBI CTAG 1 cut(s) 110
FspI TGCGCA 1 cut(s) 373
GlaI GCGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 411
HhaI GCGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 17, 119, 282
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 262
HphI GGTGA 2 cut(s) 210, 356
Hpy166II GTNNAC 4 cut(s) 105, 192, 270, 391
Hpy188III TCNNGA 2 cut(s) 180, 365
Hpy8I GTNNAC 4 cut(s) 105, 192, 270, 391
HpyAV CCTTC 2 cut(s) 240, 341
HpyCH4IV ACGT 3 cut(s) 62, 292, 439
HpyCH4V TGCA 2 cut(s) 17, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 3 cut(s) 62, 292, 439
Hsp92II CATG 3 cut(s) 17, 119, 282
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 8 cut(s) 3, 141, 143, 182, 193, 260, 294, 441
MaeI CTAG 1 cut(s) 110
MaeII ACGT 3 cut(s) 62, 292, 439
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 195, 264
MluCI AATT 3 cut(s) 398, 407, 415
MnlI CCTC 2 cut(s) 179, 333
MseI TTAA 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 115
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 17, 119, 282
NsbI TGCGCA 1 cut(s) 373
NspI RCATGY 1 cut(s) 282
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 293
PshAI GACNNNNGTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 1 cut(s) 39
SetI ASST 7 cut(s) 65, 290, 295, 325, 352, 415, 442
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 3 cut(s) 398, 407, 415
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 115
TaiI ACGT 3 cut(s) 65, 295, 442
TaqI TCGA 1 cut(s) 250
TasI AATT 3 cut(s) 398, 407, 415
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 313
TspRI CASTG 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 43
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 282
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.