Zinc knuckle (CCHC-type) family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G12880 AT3G43490 AT3G43503 AT3G43590 AT5G36240 |
| fragaria_vesca | FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 |
| malus_domestica | MD03G1161300.v1.1 |
| prunus_persica | Prupe.6G179900_v2.0.a1 Prupe.6G179900_v2.0.a1 |
| pyrus_communis | pycom03g11370 pycom11g15120 |
| rosa_chinensis | RchiOBHm_Chr6g0255381 |
| rosa_laevigata | RLG00000003331 RLG00000014842 |
| rosa_multiflora | Rmu_sc0025504.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00210030 |
| rosa_rugosa | Rorug05G0557800 Rorug05G0557800 Rorug05G0557900 Rorug05G0558000.1 |
| rosa_samantha | Rh6AG075400 Rh6BG068200 Rh6CG067900 Rh6DG064500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1398 |
| Acc36I | ACCTGC | 1 cut(s) | 1597 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1604 |
| AccI | GTMKAC | 2 cut(s) | 87, 904 |
| AccIII | TCCGGA | 1 cut(s) | 670 |
| AciI | CCGC | 2 cut(s) | 1311, 1618 |
| AclWI | GGATC | 3 cut(s) | 59, 1096, 1325 |
| AcoI | YGGCCR | 1 cut(s) | 808 |
| AcsI | RAATTY | 4 cut(s) | 26, 312, 1024, 1445 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AcvI | CACGTG | 1 cut(s) | 1013 |
| AfaI | GTAC | 4 cut(s) | 223, 680, 758, 783 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 488, 1604 |
| AgsI | TTSAA | 8 cut(s) | 139, 299, 538, 615, 775, 827, 1450, 1512 |
| AjnI | CCWGG | 2 cut(s) | 829, 1125 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1435, 1467 |
| Alw26I | GTCTC | 3 cut(s) | 714, 1134, 1380 |
| AlwI | GGATC | 3 cut(s) | 59, 1096, 1325 |
| Ama87I | CYCGRG | 2 cut(s) | 1468, 1495 |
| Aor13HI | TCCGGA | 1 cut(s) | 670 |
| AoxI | GGCC | 2 cut(s) | 808, 1367 |
| ApeKI | GCWGC | 1 cut(s) | 1519 |
| ApoI | RAATTY | 4 cut(s) | 26, 312, 1024, 1445 |
| AspS9I | GGNCC | 1 cut(s) | 1499 |
| AsuC2I | CCSGG | 2 cut(s) | 1469, 1470 |
| AsuHPI | GGTGA | 5 cut(s) | 383, 508, 1278, 1398, 1497 |
| AsuNHI | GCTAGC | 1 cut(s) | 428 |
| AvaI | CYCGRG | 2 cut(s) | 1468, 1495 |
| AvaII | GGWCC | 1 cut(s) | 1499 |
| BalI | TGGCCA | 1 cut(s) | 810 |
| BauI | CACGAG | 1 cut(s) | 1104 |
| BbrPI | CACGTG | 1 cut(s) | 1013 |
| BbsI | GAAGAC | 2 cut(s) | 54, 60 |
| BbvI | GCAGC | 1 cut(s) | 1531 |
| BccI | CCATC | 3 cut(s) | 223, 819, 1396 |
| BceAI | ACGGC | 1 cut(s) | 109 |
| BciT130I | CCWGG | 2 cut(s) | 831, 1127 |
| BcnI | CCSGG | 2 cut(s) | 1469, 1470 |
| BcoDI | GTCTC | 3 cut(s) | 714, 1134, 1380 |
| BfaI | CTAG | 2 cut(s) | 429, 1482 |
| BfmI | CTRYAG | 5 cut(s) | 862, 982, 1075, 1432, 1621 |
| BfuAI | ACCTGC | 1 cut(s) | 1597 |
| BglII | AGATCT | 2 cut(s) | 127, 398 |
| BisI | GCNGC | 1 cut(s) | 1520 |
| BlsI | GCNGC | 1 cut(s) | 1521 |
| BmcAI | AGTACT | 2 cut(s) | 223, 758 |
| Bme1390I | CCNGG | 4 cut(s) | 831, 1127, 1469, 1470 |
| Bme18I | GGWCC | 1 cut(s) | 1499 |
| BmeT110I | CYCGRG | 2 cut(s) | 1468, 1495 |
| BmgT120I | GGNCC | 1 cut(s) | 1499 |
| BmiI | GGNNCC | 2 cut(s) | 1329, 1500 |
| BmrFI | CCNGG | 4 cut(s) | 831, 1127, 1469, 1470 |
| BmrI | ACTGGG | 1 cut(s) | 887 |
| BmsI | GCATC | 4 cut(s) | 475, 1498, 1543, 1561 |
| BmtI | GCTAGC | 1 cut(s) | 432 |
| BmuI | ACTGGG | 1 cut(s) | 887 |
| BpiI | GAAGAC | 2 cut(s) | 54, 60 |
| BpmI | CTGGAG | 1 cut(s) | 927 |
| BpuMI | CCSGG | 2 cut(s) | 1469, 1470 |
| BsaAI | YACGTR | 1 cut(s) | 1013 |
| BsaBI | GATNNNNATC | 1 cut(s) | 192 |
| BsaI | GGTCTC | 1 cut(s) | 1134 |
| BsaJI | CCNNGG | 5 cut(s) | 5, 1125, 1289, 1468, 1598 |
| BsaWI | WCCGGW | 2 cut(s) | 670, 1330 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 488, 1604 |
| Bse1I | ACTGG | 5 cut(s) | 68, 652, 882, 897, 972 |
| Bse8I | GATNNNNATC | 1 cut(s) | 192 |
| BseAI | TCCGGA | 1 cut(s) | 670 |
| BseBI | CCWGG | 2 cut(s) | 831, 1127 |
| BseDI | CCNNGG | 5 cut(s) | 5, 1125, 1289, 1468, 1598 |
| BseGI | GGATG | 2 cut(s) | 388, 784 |
| BseJI | GATNNNNATC | 1 cut(s) | 192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 488, 1604 |
| BseMII | CTCAG | 3 cut(s) | 255, 1209, 1490 |
| BseNI | ACTGG | 5 cut(s) | 68, 652, 882, 897, 972 |
| BseRI | GAGGAG | 2 cut(s) | 190, 371 |
| BseXI | GCAGC | 1 cut(s) | 1531 |
| BsgI | GTGCAG | 1 cut(s) | 1575 |
| BshFI | GGCC | 2 cut(s) | 810, 1369 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1468, 1495 |
| BsiSI | CCGG | 3 cut(s) | 671, 1331, 1469 |
| BslFI | GGGAC | 1 cut(s) | 633 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 488, 1604 |
| BsmAI | GTCTC | 3 cut(s) | 714, 1134, 1380 |
| BsmFI | GGGAC | 1 cut(s) | 633 |
| BsmI | GAATGC | 2 cut(s) | 983, 1115 |
| BsnI | GGCC | 2 cut(s) | 810, 1369 |
| Bso31I | GGTCTC | 1 cut(s) | 1134 |
| BsoBI | CYCGRG | 2 cut(s) | 1468, 1495 |
| Bsp13I | TCCGGA | 1 cut(s) | 670 |
| Bsp1407I | TGTACA | 1 cut(s) | 781 |
| Bsp143I | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| BspACI | CCGC | 2 cut(s) | 1311, 1618 |
| BspANI | GGCC | 2 cut(s) | 810, 1369 |
| BspCNI | CTCAG | 3 cut(s) | 256, 1208, 1489 |
| BspEI | TCCGGA | 1 cut(s) | 670 |
| BspLI | GGNNCC | 2 cut(s) | 1329, 1500 |
| BspMI | ACCTGC | 1 cut(s) | 1597 |
| BspOI | GCTAGC | 1 cut(s) | 432 |
| BspPI | GGATC | 3 cut(s) | 59, 1096, 1325 |
| BspQI | GCTCTTC | 1 cut(s) | 1603 |
| BspTNI | GGTCTC | 1 cut(s) | 1134 |
| BsrGI | TGTACA | 1 cut(s) | 781 |
| BsrI | ACTGG | 5 cut(s) | 68, 652, 882, 897, 972 |
| BssECI | CCNNGG | 5 cut(s) | 5, 1125, 1289, 1468, 1598 |
| BssMI | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| BssSI | CACGAG | 1 cut(s) | 1104 |
| BssT1I | CCWWGG | 2 cut(s) | 1289, 1598 |
| Bst2BI | CACGAG | 1 cut(s) | 1104 |
| Bst2UI | CCWGG | 2 cut(s) | 831, 1127 |
| Bst4CI | ACNGT | 6 cut(s) | 226, 843, 962, 1145, 1580, 1650 |
| Bst6I | CTCTTC | 3 cut(s) | 278, 336, 1603 |
| BstAUI | TGTACA | 1 cut(s) | 781 |
| BstBAI | YACGTR | 1 cut(s) | 1013 |
| BstC8I | GCNNGC | 1 cut(s) | 430 |
| BstDEI | CTNAG | 8 cut(s) | 131, 249, 264, 555, 762, 1134, 1195, 1476 |
| BstEII | GGTNACC | 1 cut(s) | 1404 |
| BstF5I | GGATG | 2 cut(s) | 388, 784 |
| BstKTI | GATC | 7 cut(s) | 67, 130, 196, 401, 1091, 1320, 1439 |
| BstMAI | GTCTC | 3 cut(s) | 714, 1134, 1380 |
| BstMBI | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 565, 816 |
| BstNI | CCWGG | 2 cut(s) | 831, 1127 |
| BstNSI | RCATGY | 1 cut(s) | 900 |
| BstPI | GGTNACC | 1 cut(s) | 1404 |
| BstSCI | CCNGG | 4 cut(s) | 829, 1125, 1467, 1468 |
| BstSFI | CTRYAG | 5 cut(s) | 862, 982, 1075, 1432, 1621 |
| BstV1I | GCAGC | 1 cut(s) | 1531 |
| BstV2I | GAAGAC | 2 cut(s) | 54, 60 |
| BstX2I | RGATCY | 3 cut(s) | 64, 127, 398 |
| BstYI | RGATCY | 3 cut(s) | 64, 127, 398 |
| BsuRI | GGCC | 2 cut(s) | 810, 1369 |
| BtsCI | GGATG | 2 cut(s) | 388, 784 |
| BtsI | GCAGTG | 1 cut(s) | 614 |
| BtsIMutI | CAGTG | 3 cut(s) | 614, 839, 979 |
| BveI | ACCTGC | 1 cut(s) | 1597 |
| Cac8I | GCNNGC | 1 cut(s) | 430 |
| Cfr13I | GGNCC | 1 cut(s) | 1499 |
| Cfr9I | CCCGGG | 1 cut(s) | 1468 |
| CsiI | ACCWGGT | 1 cut(s) | 829 |
| Csp6I | GTAC | 4 cut(s) | 222, 679, 757, 782 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1438, 1473 |
| CviQI | GTAC | 4 cut(s) | 222, 679, 757, 782 |
| DdeI | CTNAG | 8 cut(s) | 131, 249, 264, 555, 762, 1134, 1195, 1476 |
| DpnI | GATC | 7 cut(s) | 66, 129, 195, 400, 1090, 1319, 1438 |
| DpnII | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| EaeI | YGGCCR | 1 cut(s) | 808 |
| Eam1104I | CTCTTC | 3 cut(s) | 278, 336, 1603 |
| EarI | CTCTTC | 3 cut(s) | 278, 336, 1603 |
| Eco130I | CCWWGG | 2 cut(s) | 1289, 1598 |
| Eco31I | GGTCTC | 1 cut(s) | 1134 |
| Eco47I | GGWCC | 1 cut(s) | 1499 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| Eco72I | CACGTG | 1 cut(s) | 1013 |
| Eco88I | CYCGRG | 2 cut(s) | 1468, 1495 |
| Eco91I | GGTNACC | 1 cut(s) | 1404 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1499 |
| EcoO65I | GGTNACC | 1 cut(s) | 1404 |
| EcoRI | GAATTC | 1 cut(s) | 1024 |
| EcoRII | CCWGG | 2 cut(s) | 829, 1125 |
| EcoT14I | CCWWGG | 2 cut(s) | 1289, 1598 |
| ErhI | CCWWGG | 2 cut(s) | 1289, 1598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 557, 589 |
| FaqI | GGGAC | 1 cut(s) | 633 |
| FblI | GTMKAC | 2 cut(s) | 87, 904 |
| Fnu4HI | GCNGC | 1 cut(s) | 1520 |
| FokI | GGATG | 2 cut(s) | 395, 791 |
| Fsp4HI | GCNGC | 1 cut(s) | 1520 |
| FspBI | CTAG | 2 cut(s) | 429, 1482 |
| GluI | GCNGC | 1 cut(s) | 1520 |
| GsuI | CTGGAG | 1 cut(s) | 927 |
| HaeIII | GGCC | 2 cut(s) | 810, 1369 |
| HapII | CCGG | 3 cut(s) | 671, 1331, 1469 |
| HincII | GTYRAC | 2 cut(s) | 88, 875 |
| HindII | GTYRAC | 2 cut(s) | 88, 875 |
| HindIII | AAGCTT | 5 cut(s) | 133, 182, 293, 449, 802 |
| HinfI | GANTC | 8 cut(s) | 188, 206, 932, 1058, 1205, 1220, 1340, 1573 |
| HpaII | CCGG | 3 cut(s) | 671, 1331, 1469 |
| HphI | GGTGA | 5 cut(s) | 383, 508, 1278, 1398, 1497 |
| Hpy166II | GTNNAC | 4 cut(s) | 88, 875, 890, 905 |
| Hpy188I | TCNGA | 8 cut(s) | 193, 205, 265, 403, 444, 1023, 1198, 1572 |
| Hpy188III | TCNNGA | 5 cut(s) | 482, 671, 944, 1092, 1106 |
| Hpy8I | GTNNAC | 4 cut(s) | 88, 875, 890, 905 |
| Hpy99I | CGWCG | 1 cut(s) | 1033 |
| HpyAV | CCTTC | 7 cut(s) | 368, 769, 992, 1359, 1512, 1518, 1533 |
| HpyCH4III | ACNGT | 6 cut(s) | 226, 843, 962, 1145, 1580, 1650 |
| HpyCH4IV | ACGT | 1 cut(s) | 1012 |
| HpyCH4V | TGCA | 5 cut(s) | 602, 639, 747, 1592, 1634 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 565, 816 |
| HpyF3I | CTNAG | 8 cut(s) | 131, 249, 264, 555, 762, 1134, 1195, 1476 |
| HpySE526I | ACGT | 1 cut(s) | 1012 |
| Kpn2I | TCCGGA | 1 cut(s) | 670 |
| Kzo9I | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| LguI | GCTCTTC | 1 cut(s) | 1603 |
| LmnI | GCTCC | 3 cut(s) | 461, 517, 698 |
| Lsp1109I | GCAGC | 1 cut(s) | 1531 |
| LweI | GCATC | 4 cut(s) | 475, 1498, 1543, 1561 |
| MabI | ACCWGGT | 1 cut(s) | 829 |
| MaeI | CTAG | 2 cut(s) | 429, 1482 |
| MaeII | ACGT | 1 cut(s) | 1012 |
| MaeIII | GTNAC | 2 cut(s) | 1059, 1404 |
| MalI | GATC | 7 cut(s) | 66, 129, 195, 400, 1090, 1319, 1438 |
| MboI | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| MfeI | CAATTG | 1 cut(s) | 538 |
| MflI | RGATCY | 3 cut(s) | 64, 127, 398 |
| MlsI | TGGCCA | 1 cut(s) | 810 |
| MluCI | AATT | 9 cut(s) | 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450 |
| MluNI | TGGCCA | 1 cut(s) | 810 |
| MlyI | GAGTC | 2 cut(s) | 1067, 1229 |
| MmeI | TCCRAC | 2 cut(s) | 569, 1295 |
| Mox20I | TGGCCA | 1 cut(s) | 810 |
| MroI | TCCGGA | 1 cut(s) | 670 |
| MscI | TGGCCA | 1 cut(s) | 810 |
| MseI | TTAA | 4 cut(s) | 234, 255, 710, 957 |
| MslI | CAYNNNNRTG | 3 cut(s) | 844, 1015, 1581 |
| Msp20I | TGGCCA | 1 cut(s) | 810 |
| MspI | CCGG | 3 cut(s) | 671, 1331, 1469 |
| MspR9I | CCNGG | 4 cut(s) | 831, 1127, 1469, 1470 |
| MunI | CAATTG | 1 cut(s) | 538 |
| Mva1269I | GAATGC | 2 cut(s) | 983, 1115 |
| MvaI | CCWGG | 2 cut(s) | 831, 1127 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 565, 816 |
| NciI | CCSGG | 2 cut(s) | 1469, 1470 |
| NdeII | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| NheI | GCTAGC | 1 cut(s) | 428 |
| NlaIV | GGNNCC | 2 cut(s) | 1329, 1500 |
| NmeAIII | GCCGAG | 1 cut(s) | 30 |
| NmuCI | GTSAC | 2 cut(s) | 1059, 1404 |
| NspI | RCATGY | 1 cut(s) | 900 |
| PciSI | GCTCTTC | 1 cut(s) | 1603 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 48, 93 |
| PctI | GAATGC | 2 cut(s) | 983, 1115 |
| PfeI | GAWTC | 6 cut(s) | 188, 206, 932, 1205, 1340, 1573 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1604 |
| PkrI | GCNGC | 1 cut(s) | 1521 |
| PleI | GAGTC | 2 cut(s) | 1066, 1228 |
| PmaCI | CACGTG | 1 cut(s) | 1013 |
| PmlI | CACGTG | 1 cut(s) | 1013 |
| PpsI | GAGTC | 2 cut(s) | 1066, 1228 |
| Ppu21I | YACGTR | 1 cut(s) | 1013 |
| PpuMI | RGGWCCY | 1 cut(s) | 1499 |
| PsiI | TTATAA | 1 cut(s) | 1398 |
| Psp5II | RGGWCCY | 1 cut(s) | 1499 |
| Psp6I | CCWGG | 2 cut(s) | 829, 1125 |
| PspCI | CACGTG | 1 cut(s) | 1013 |
| PspEI | GGTNACC | 1 cut(s) | 1404 |
| PspGI | CCWGG | 2 cut(s) | 829, 1125 |
| PspN4I | GGNNCC | 2 cut(s) | 1329, 1500 |
| PspPI | GGNCC | 1 cut(s) | 1499 |
| PspPPI | RGGWCCY | 1 cut(s) | 1499 |
| PsuI | RGATCY | 3 cut(s) | 64, 127, 398 |
| RsaI | GTAC | 4 cut(s) | 223, 680, 758, 783 |
| RsaNI | GTAC | 4 cut(s) | 222, 679, 757, 782 |
| RseI | CAYNNNNRTG | 3 cut(s) | 844, 1015, 1581 |
| SalI | GTCGAC | 1 cut(s) | 86 |
| SapI | GCTCTTC | 1 cut(s) | 1603 |
| SaqAI | TTAA | 4 cut(s) | 234, 255, 710, 957 |
| SatI | GCNGC | 1 cut(s) | 1520 |
| Sau3AI | GATC | 7 cut(s) | 64, 127, 193, 398, 1088, 1317, 1436 |
| Sau96I | GGNCC | 1 cut(s) | 1499 |
| ScaI | AGTACT | 2 cut(s) | 223, 758 |
| SchI | GAGTC | 2 cut(s) | 1067, 1229 |
| ScrFI | CCNGG | 4 cut(s) | 831, 1127, 1469, 1470 |
| SexAI | ACCWGGT | 1 cut(s) | 829 |
| SfaNI | GCATC | 4 cut(s) | 475, 1498, 1543, 1561 |
| SfcI | CTRYAG | 5 cut(s) | 862, 982, 1075, 1432, 1621 |
| SinI | GGWCC | 1 cut(s) | 1499 |
| SmaI | CCCGGG | 1 cut(s) | 1470 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 844, 1015, 1581 |
| Sse9I | AATT | 9 cut(s) | 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450 |
| SsiI | CCGC | 2 cut(s) | 1311, 1618 |
| SspMI | CTAG | 2 cut(s) | 429, 1482 |
| StyD4I | CCNGG | 4 cut(s) | 829, 1125, 1467, 1468 |
| StyI | CCWWGG | 2 cut(s) | 1289, 1598 |
| TaaI | ACNGT | 6 cut(s) | 226, 843, 962, 1145, 1580, 1650 |
| TaiI | ACGT | 1 cut(s) | 1015 |
| TaqI | TCGA | 4 cut(s) | 87, 161, 655, 1031 |
| TasI | AATT | 9 cut(s) | 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450 |
| TatI | WGTACW | 4 cut(s) | 221, 678, 756, 781 |
| TfiI | GAWTC | 6 cut(s) | 188, 206, 932, 1205, 1340, 1573 |
| Tru1I | TTAA | 4 cut(s) | 234, 255, 710, 957 |
| Tru9I | TTAA | 4 cut(s) | 234, 255, 710, 957 |
| TscAI | CASTG | 3 cut(s) | 614, 846, 979 |
| TseFI | GTSAC | 2 cut(s) | 1059, 1404 |
| TseI | GCWGC | 1 cut(s) | 1519 |
| Tsp45I | GTSAC | 2 cut(s) | 1059, 1404 |
| TspGWI | ACGGA | 1 cut(s) | 57 |
| TspMI | CCCGGG | 1 cut(s) | 1468 |
| TspRI | CASTG | 3 cut(s) | 614, 846, 979 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1604 |
| VpaK11BI | GGWCC | 1 cut(s) | 1499 |
| XapI | RAATTY | 4 cut(s) | 26, 312, 1024, 1445 |
| XceI | RCATGY | 1 cut(s) | 900 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1223 |
| XmaI | CCCGGG | 1 cut(s) | 1468 |
| XmiI | GTMKAC | 2 cut(s) | 87, 904 |
| XspI | CTAG | 2 cut(s) | 429, 1482 |
| ZrmI | AGTACT | 2 cut(s) | 223, 758 |