AT3G43590

Zinc knuckle (CCHC-type) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
15509527 .. 15512574
3048 bp
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UTR
Exon/CDS
Intron
AT3G43590.1

Sequence Viewer

Length: 1656 bp
ATGCCGAGGCAGAATAAAGATGAAAAATTTGTTTTTGATGACGGAGAAGACGAAGACAGAGAAGATCCAGTAGCCATTACAGAAGTCGACAACGGCGAAGAAGAAGATGATGATGAAGCTAATGAAGATCTAAGCTTGAAGATTTTAGAGAAAGCATTATCGAGGCGTGATGTTGGGAACAAGCTTGATTCTGATCTCTCCTCCGATTCTGGTGTAGTTAGTACTGTGATGGTTAATGGAGTAAAGTCTAAGGTTAAAAAGTCTGAGAGTAGTAAGAAGATGAAGAGAAATAAGCTTGAAGCTGACCATGAAATTCCTATTGTTTGGAATGACCAAGATGAAGAGAAAGTGGTGGAGGAGATAGTAAAAGGTGAAGGAGAGGATGATGAGGTTGAGAGATCTGATGAACCAAAAACTGAAGAAACAGCTAGCAATTTGGTTCTGAAAAAGCTTCTTCGTGGAGCAAGATACTTTGACCCTCCTGATGCTGGTTGGGTGAGTTGTTATAGTTGTGGGGAGCAAGGTCATACAAGTTTCAATTGTCCAACTCCTACTAAGCGTAGAAAGCCTTGCTTTATATGTGGGAGTTTGGAACATGGTGCAAAGCAGTGTTCAAAGGGACATGATTGTTATATATGCAAAAAAACTGGACATCGAGCTAAAGATTGTCCGGATAAGTACAAAAACGGGTCTAAAGGAGCTGTATGTTTAAGATGTGGAGACTTTGGACATGACATGATTTTGTGCAAGTATGAGTACTCTAAGGAAGATTTGAAGGATGTACAATGCTATATCTGTAAAAGCTTTGGCCATCTATGCTGTGTTGAACCTGGTAATTCACTGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGGGTCATAGTGGACTGGCATGTGGTAGACACTATGAAGAAAGCAACGAAAATGATTCTGCCACTCCAGAAAGGCTTTTTAACAGTAGGGAAGCCAGTGAATGCTATAGGTGTGGGGAAGAAGGGCATTTCGCACGTGAATGTCCGAATTCGTCGAGCATAAGCACTTCACATGGCAGAGAGTCACAAACTTTATGCTACAGATGTAATGGATCAGGACATTTCGCTCGTGAATGCCCCAATTCCTCCCAGGTTTCTAAGAGAGACCGTGAAACATCTACAACATCACATAAATCTCGCAAGAAAAACAAAGAGAACTCAGAACACGATTCTACTCCCCATGAGTCCAATGGAAAGACAAAGAAGAAGAAGAAGAAGAAAACACATAAAGAAGAACAGCCCCAGACTTCACCAAGGAAACGAAAACACAGAGGCGGTTGGATCACAGAGGAACCGGAAGAAGAATCTTTCCAAAGAGGAAAGATGAGAAGGCCAAAGTCTCCCATTACACCATCGGGTTATAACAGGTCACCCTCTACACATATTGGTCATAACTATAGATCGCCAAAATTCAATTCTGGTGGGCATTACCCGGGTTCTCAGTCTAGTAGGCATCACTCGGGTCCTTCACCTTCAAGGTGGCAGCCTTCTCATCAGCATCATCATCATCATCAGCATCTTCATCATCATCATCAGAATCACAGTTATGAACCTGCACCACCAAGGCATGGAAGAGCTAACCGCTATAGTGAGTTTGCAGGGAACTATGAACGGTGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

62.57

Weight (kDa)

7.57

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 326 - 342 1.1e-07 Zinc knuckle
zf-CCHC PF00098 358 - 373 8e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1398
Acc36I ACCTGC 1 cut(s) 1597
AccB7I CCANNNNNTGG 1 cut(s) 1604
AccI GTMKAC 2 cut(s) 87, 904
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 2 cut(s) 1311, 1618
AclWI GGATC 3 cut(s) 59, 1096, 1325
AcoI YGGCCR 1 cut(s) 808
AcsI RAATTY 4 cut(s) 26, 312, 1024, 1445
AcuI CTGAAG 1 cut(s) 438
AcvI CACGTG 1 cut(s) 1013
AfaI GTAC 4 cut(s) 223, 680, 758, 783
AfiI CCNNNNNNNGG 2 cut(s) 488, 1604
AgsI TTSAA 8 cut(s) 139, 299, 538, 615, 775, 827, 1450, 1512
AjnI CCWGG 2 cut(s) 829, 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 1435, 1467
Alw26I GTCTC 3 cut(s) 714, 1134, 1380
AlwI GGATC 3 cut(s) 59, 1096, 1325
Ama87I CYCGRG 2 cut(s) 1468, 1495
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 2 cut(s) 808, 1367
ApeKI GCWGC 1 cut(s) 1519
ApoI RAATTY 4 cut(s) 26, 312, 1024, 1445
AspS9I GGNCC 1 cut(s) 1499
AsuC2I CCSGG 2 cut(s) 1469, 1470
AsuHPI GGTGA 5 cut(s) 383, 508, 1278, 1398, 1497
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 1468, 1495
AvaII GGWCC 1 cut(s) 1499
BalI TGGCCA 1 cut(s) 810
BauI CACGAG 1 cut(s) 1104
BbrPI CACGTG 1 cut(s) 1013
BbsI GAAGAC 2 cut(s) 54, 60
BbvI GCAGC 1 cut(s) 1531
BccI CCATC 3 cut(s) 223, 819, 1396
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 2 cut(s) 831, 1127
BcnI CCSGG 2 cut(s) 1469, 1470
BcoDI GTCTC 3 cut(s) 714, 1134, 1380
BfaI CTAG 2 cut(s) 429, 1482
BfmI CTRYAG 5 cut(s) 862, 982, 1075, 1432, 1621
BfuAI ACCTGC 1 cut(s) 1597
BglII AGATCT 2 cut(s) 127, 398
BisI GCNGC 1 cut(s) 1520
BlsI GCNGC 1 cut(s) 1521
BmcAI AGTACT 2 cut(s) 223, 758
Bme1390I CCNGG 4 cut(s) 831, 1127, 1469, 1470
Bme18I GGWCC 1 cut(s) 1499
BmeT110I CYCGRG 2 cut(s) 1468, 1495
BmgT120I GGNCC 1 cut(s) 1499
BmiI GGNNCC 2 cut(s) 1329, 1500
BmrFI CCNGG 4 cut(s) 831, 1127, 1469, 1470
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 4 cut(s) 475, 1498, 1543, 1561
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 2 cut(s) 54, 60
BpmI CTGGAG 1 cut(s) 927
BpuMI CCSGG 2 cut(s) 1469, 1470
BsaAI YACGTR 1 cut(s) 1013
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 1134
BsaJI CCNNGG 5 cut(s) 5, 1125, 1289, 1468, 1598
BsaWI WCCGGW 2 cut(s) 670, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 1604
Bse1I ACTGG 5 cut(s) 68, 652, 882, 897, 972
Bse8I GATNNNNATC 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 2 cut(s) 831, 1127
BseDI CCNNGG 5 cut(s) 5, 1125, 1289, 1468, 1598
BseGI GGATG 2 cut(s) 388, 784
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 488, 1604
BseMII CTCAG 3 cut(s) 255, 1209, 1490
BseNI ACTGG 5 cut(s) 68, 652, 882, 897, 972
BseRI GAGGAG 2 cut(s) 190, 371
BseXI GCAGC 1 cut(s) 1531
BsgI GTGCAG 1 cut(s) 1575
BshFI GGCC 2 cut(s) 810, 1369
BsiHKCI CYCGRG 2 cut(s) 1468, 1495
BsiSI CCGG 3 cut(s) 671, 1331, 1469
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 488, 1604
BsmAI GTCTC 3 cut(s) 714, 1134, 1380
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 2 cut(s) 983, 1115
BsnI GGCC 2 cut(s) 810, 1369
Bso31I GGTCTC 1 cut(s) 1134
BsoBI CYCGRG 2 cut(s) 1468, 1495
Bsp13I TCCGGA 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
BspACI CCGC 2 cut(s) 1311, 1618
BspANI GGCC 2 cut(s) 810, 1369
BspCNI CTCAG 3 cut(s) 256, 1208, 1489
BspEI TCCGGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 1329, 1500
BspMI ACCTGC 1 cut(s) 1597
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 3 cut(s) 59, 1096, 1325
BspQI GCTCTTC 1 cut(s) 1603
BspTNI GGTCTC 1 cut(s) 1134
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 5 cut(s) 68, 652, 882, 897, 972
BssECI CCNNGG 5 cut(s) 5, 1125, 1289, 1468, 1598
BssMI GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
BssSI CACGAG 1 cut(s) 1104
BssT1I CCWWGG 2 cut(s) 1289, 1598
Bst2BI CACGAG 1 cut(s) 1104
Bst2UI CCWGG 2 cut(s) 831, 1127
Bst4CI ACNGT 6 cut(s) 226, 843, 962, 1145, 1580, 1650
Bst6I CTCTTC 3 cut(s) 278, 336, 1603
BstAUI TGTACA 1 cut(s) 781
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 8 cut(s) 131, 249, 264, 555, 762, 1134, 1195, 1476
BstEII GGTNACC 1 cut(s) 1404
BstF5I GGATG 2 cut(s) 388, 784
BstKTI GATC 7 cut(s) 67, 130, 196, 401, 1091, 1320, 1439
BstMAI GTCTC 3 cut(s) 714, 1134, 1380
BstMBI GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
BstMWI GCNNNNNNNGC 2 cut(s) 565, 816
BstNI CCWGG 2 cut(s) 831, 1127
BstNSI RCATGY 1 cut(s) 900
BstPI GGTNACC 1 cut(s) 1404
BstSCI CCNGG 4 cut(s) 829, 1125, 1467, 1468
BstSFI CTRYAG 5 cut(s) 862, 982, 1075, 1432, 1621
BstV1I GCAGC 1 cut(s) 1531
BstV2I GAAGAC 2 cut(s) 54, 60
BstX2I RGATCY 3 cut(s) 64, 127, 398
BstYI RGATCY 3 cut(s) 64, 127, 398
BsuRI GGCC 2 cut(s) 810, 1369
BtsCI GGATG 2 cut(s) 388, 784
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 3 cut(s) 614, 839, 979
BveI ACCTGC 1 cut(s) 1597
Cac8I GCNNGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 1499
Cfr9I CCCGGG 1 cut(s) 1468
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 4 cut(s) 222, 679, 757, 782
CspCI CAANNNNNGTGG 2 cut(s) 1438, 1473
CviQI GTAC 4 cut(s) 222, 679, 757, 782
DdeI CTNAG 8 cut(s) 131, 249, 264, 555, 762, 1134, 1195, 1476
DpnI GATC 7 cut(s) 66, 129, 195, 400, 1090, 1319, 1438
DpnII GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
EaeI YGGCCR 1 cut(s) 808
Eam1104I CTCTTC 3 cut(s) 278, 336, 1603
EarI CTCTTC 3 cut(s) 278, 336, 1603
Eco130I CCWWGG 2 cut(s) 1289, 1598
Eco31I GGTCTC 1 cut(s) 1134
Eco47I GGWCC 1 cut(s) 1499
Eco57I CTGAAG 1 cut(s) 438
Eco72I CACGTG 1 cut(s) 1013
Eco88I CYCGRG 2 cut(s) 1468, 1495
Eco91I GGTNACC 1 cut(s) 1404
EcoO109I RGGNCCY 1 cut(s) 1499
EcoO65I GGTNACC 1 cut(s) 1404
EcoRI GAATTC 1 cut(s) 1024
EcoRII CCWGG 2 cut(s) 829, 1125
EcoT14I CCWWGG 2 cut(s) 1289, 1598
ErhI CCWWGG 2 cut(s) 1289, 1598
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 633
FblI GTMKAC 2 cut(s) 87, 904
Fnu4HI GCNGC 1 cut(s) 1520
FokI GGATG 2 cut(s) 395, 791
Fsp4HI GCNGC 1 cut(s) 1520
FspBI CTAG 2 cut(s) 429, 1482
GluI GCNGC 1 cut(s) 1520
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 2 cut(s) 810, 1369
HapII CCGG 3 cut(s) 671, 1331, 1469
HincII GTYRAC 2 cut(s) 88, 875
HindII GTYRAC 2 cut(s) 88, 875
HindIII AAGCTT 5 cut(s) 133, 182, 293, 449, 802
HinfI GANTC 8 cut(s) 188, 206, 932, 1058, 1205, 1220, 1340, 1573
HpaII CCGG 3 cut(s) 671, 1331, 1469
HphI GGTGA 5 cut(s) 383, 508, 1278, 1398, 1497
Hpy166II GTNNAC 4 cut(s) 88, 875, 890, 905
Hpy188I TCNGA 8 cut(s) 193, 205, 265, 403, 444, 1023, 1198, 1572
Hpy188III TCNNGA 5 cut(s) 482, 671, 944, 1092, 1106
Hpy8I GTNNAC 4 cut(s) 88, 875, 890, 905
Hpy99I CGWCG 1 cut(s) 1033
HpyAV CCTTC 7 cut(s) 368, 769, 992, 1359, 1512, 1518, 1533
HpyCH4III ACNGT 6 cut(s) 226, 843, 962, 1145, 1580, 1650
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 5 cut(s) 602, 639, 747, 1592, 1634
HpyF10VI GCNNNNNNNGC 2 cut(s) 565, 816
HpyF3I CTNAG 8 cut(s) 131, 249, 264, 555, 762, 1134, 1195, 1476
HpySE526I ACGT 1 cut(s) 1012
Kpn2I TCCGGA 1 cut(s) 670
Kzo9I GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
LguI GCTCTTC 1 cut(s) 1603
LmnI GCTCC 3 cut(s) 461, 517, 698
Lsp1109I GCAGC 1 cut(s) 1531
LweI GCATC 4 cut(s) 475, 1498, 1543, 1561
MabI ACCWGGT 1 cut(s) 829
MaeI CTAG 2 cut(s) 429, 1482
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 2 cut(s) 1059, 1404
MalI GATC 7 cut(s) 66, 129, 195, 400, 1090, 1319, 1438
MboI GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
MfeI CAATTG 1 cut(s) 538
MflI RGATCY 3 cut(s) 64, 127, 398
MlsI TGGCCA 1 cut(s) 810
MluCI AATT 9 cut(s) 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450
MluNI TGGCCA 1 cut(s) 810
MlyI GAGTC 2 cut(s) 1067, 1229
MmeI TCCRAC 2 cut(s) 569, 1295
Mox20I TGGCCA 1 cut(s) 810
MroI TCCGGA 1 cut(s) 670
MscI TGGCCA 1 cut(s) 810
MseI TTAA 4 cut(s) 234, 255, 710, 957
MslI CAYNNNNRTG 3 cut(s) 844, 1015, 1581
Msp20I TGGCCA 1 cut(s) 810
MspI CCGG 3 cut(s) 671, 1331, 1469
MspR9I CCNGG 4 cut(s) 831, 1127, 1469, 1470
MunI CAATTG 1 cut(s) 538
Mva1269I GAATGC 2 cut(s) 983, 1115
MvaI CCWGG 2 cut(s) 831, 1127
MwoI GCNNNNNNNGC 2 cut(s) 565, 816
NciI CCSGG 2 cut(s) 1469, 1470
NdeII GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
NheI GCTAGC 1 cut(s) 428
NlaIV GGNNCC 2 cut(s) 1329, 1500
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 1059, 1404
NspI RCATGY 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 1603
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 93
PctI GAATGC 2 cut(s) 983, 1115
PfeI GAWTC 6 cut(s) 188, 206, 932, 1205, 1340, 1573
PflMI CCANNNNNTGG 1 cut(s) 1604
PkrI GCNGC 1 cut(s) 1521
PleI GAGTC 2 cut(s) 1066, 1228
PmaCI CACGTG 1 cut(s) 1013
PmlI CACGTG 1 cut(s) 1013
PpsI GAGTC 2 cut(s) 1066, 1228
Ppu21I YACGTR 1 cut(s) 1013
PpuMI RGGWCCY 1 cut(s) 1499
PsiI TTATAA 1 cut(s) 1398
Psp5II RGGWCCY 1 cut(s) 1499
Psp6I CCWGG 2 cut(s) 829, 1125
PspCI CACGTG 1 cut(s) 1013
PspEI GGTNACC 1 cut(s) 1404
PspGI CCWGG 2 cut(s) 829, 1125
PspN4I GGNNCC 2 cut(s) 1329, 1500
PspPI GGNCC 1 cut(s) 1499
PspPPI RGGWCCY 1 cut(s) 1499
PsuI RGATCY 3 cut(s) 64, 127, 398
RsaI GTAC 4 cut(s) 223, 680, 758, 783
RsaNI GTAC 4 cut(s) 222, 679, 757, 782
RseI CAYNNNNRTG 3 cut(s) 844, 1015, 1581
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 1603
SaqAI TTAA 4 cut(s) 234, 255, 710, 957
SatI GCNGC 1 cut(s) 1520
Sau3AI GATC 7 cut(s) 64, 127, 193, 398, 1088, 1317, 1436
Sau96I GGNCC 1 cut(s) 1499
ScaI AGTACT 2 cut(s) 223, 758
SchI GAGTC 2 cut(s) 1067, 1229
ScrFI CCNGG 4 cut(s) 831, 1127, 1469, 1470
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 4 cut(s) 475, 1498, 1543, 1561
SfcI CTRYAG 5 cut(s) 862, 982, 1075, 1432, 1621
SinI GGWCC 1 cut(s) 1499
SmaI CCCGGG 1 cut(s) 1470
SmiMI CAYNNNNRTG 3 cut(s) 844, 1015, 1581
Sse9I AATT 9 cut(s) 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450
SsiI CCGC 2 cut(s) 1311, 1618
SspMI CTAG 2 cut(s) 429, 1482
StyD4I CCNGG 4 cut(s) 829, 1125, 1467, 1468
StyI CCWWGG 2 cut(s) 1289, 1598
TaaI ACNGT 6 cut(s) 226, 843, 962, 1145, 1580, 1650
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 4 cut(s) 87, 161, 655, 1031
TasI AATT 9 cut(s) 26, 312, 433, 538, 835, 1024, 1117, 1445, 1450
TatI WGTACW 4 cut(s) 221, 678, 756, 781
TfiI GAWTC 6 cut(s) 188, 206, 932, 1205, 1340, 1573
Tru1I TTAA 4 cut(s) 234, 255, 710, 957
Tru9I TTAA 4 cut(s) 234, 255, 710, 957
TscAI CASTG 3 cut(s) 614, 846, 979
TseFI GTSAC 2 cut(s) 1059, 1404
TseI GCWGC 1 cut(s) 1519
Tsp45I GTSAC 2 cut(s) 1059, 1404
TspGWI ACGGA 1 cut(s) 57
TspMI CCCGGG 1 cut(s) 1468
TspRI CASTG 3 cut(s) 614, 846, 979
Van91I CCANNNNNTGG 1 cut(s) 1604
VpaK11BI GGWCC 1 cut(s) 1499
XapI RAATTY 4 cut(s) 26, 312, 1024, 1445
XceI RCATGY 1 cut(s) 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 1223
XmaI CCCGGG 1 cut(s) 1468
XmiI GTMKAC 2 cut(s) 87, 904
XspI CTAG 2 cut(s) 429, 1482
ZrmI AGTACT 2 cut(s) 223, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.