Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025504.1

Orthogroup ID

OG0005730

Physical Location & Seq

Genomic Coordinates Forward (+)

2929 .. 3420

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgggcaagagggagaagcaagcgaacaagtttcactgggacgagttaagtgatgaagaaggagaactagctaatagaaaggctctgaaatctgtcgtacacatcattagcgacgatgacgaggccaatgaagatctcagcctcaaaatagttgaaaaagctctactgatgcgtgcagccaagctggcctcagagaacgacaccgttgtttccaatccagctggtttgaatggactgccttcttcgtcctctccacgggttgctgaagttgacgccgcagatttagagactaagaaagtaaagaaggatagggtgaggaagacaaattctccacgggttgctgaagttgacgctgcagatttagagactaagaaagtaaagaaggatagggtgaggaagacaaaaaagaggaagattgaagacccagctgtgagtgcctttttctcttttaccttgttcctacagaaatttgattcaaggaaaattagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

9.32

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12880 AT3G43490 AT3G43503 AT3G43590 AT5G36240
fragaria_vesca	FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241
malus_domestica	MD03G1161300.v1.1
prunus_persica	Prupe.6G179900_v2.0.a1 Prupe.6G179900_v2.0.a1
pyrus_communis	pycom03g11370 pycom11g15120
rosa_chinensis	RchiOBHm_Chr6g0255381
rosa_laevigata	RLG00000003331 RLG00000014842
rosa_multiflora	Rmu_sc0025504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210030
rosa_rugosa	Rorug05G0557800 Rorug05G0557800 Rorug05G0557900 Rorug05G0558000.1
rosa_samantha	Rh6AG075400 Rh6BG068200 Rh6CG067900 Rh6DG064500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	325, 467
AcuI	CTGAAG	2 cut(s)	285, 363
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	155, 229, 419, 477
AluBI	AGCT	5 cut(s)	71, 161, 184, 221, 428
AluI	AGCT	5 cut(s)	71, 161, 184, 221, 428
Alw26I	GTCTC	2 cut(s)	281, 359
AoxI	GGCC	2 cut(s)	123, 186
ApeKI	GCWGC	2 cut(s)	176, 353
ApoI	RAATTY	2 cut(s)	325, 467
AsuHPI	GGTGA	2 cut(s)	325, 403
BbsI	GAAGAC	3 cut(s)	326, 404, 426
BbvI	GCAGC	2 cut(s)	188, 340
BcoDI	GTCTC	2 cut(s)	281, 359
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	354, 461
BglI	GCCNNNNNGGC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	3 cut(s)	177, 276, 354
BlsI	GCNGC	3 cut(s)	178, 277, 355
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	3 cut(s)	326, 404, 426
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	254, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	254, 332
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	151, 204
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	188, 340
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	125, 188
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	281, 359
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	125, 188
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	125, 188
BspCNI	CTCAG	2 cut(s)	150, 203
BspMAI	CTGCAG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	254, 332
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	21, 174, 186
BstDEI	CTNAG	4 cut(s)	137, 190, 291, 369
BstDSI	CCRYGG	2 cut(s)	254, 332
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	281, 359
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 434
BstSFI	CTRYAG	2 cut(s)	354, 461
BstV1I	GCAGC	2 cut(s)	188, 340
BstV2I	GAAGAC	3 cut(s)	326, 404, 426
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	125, 188
BtgI	CCRYGG	2 cut(s)	254, 332
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	3 cut(s)	21, 174, 186
CseI	GACGC	2 cut(s)	281, 359
Csp6I	GTAC	1 cut(s)	98
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	4 cut(s)	137, 190, 291, 369
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	285, 363
FaqI	GGGAC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	177, 276, 354
Fsp4HI	GCNGC	3 cut(s)	177, 276, 354
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	3 cut(s)	177, 276, 354
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	125, 188
HgaI	GACGC	2 cut(s)	281, 359
Hin1I	GRCGYC	1 cut(s)	273
HincII	GTYRAC	2 cut(s)	271, 349
HindII	GTYRAC	2 cut(s)	271, 349
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	2 cut(s)	325, 403
Hpy166II	GTNNAC	3 cut(s)	100, 271, 349
Hpy188I	TCNGA	2 cut(s)	87, 193
Hpy8I	GTNNAC	3 cut(s)	100, 271, 349
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	53, 249, 298, 376
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	176, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 434
HpyF3I	CTNAG	4 cut(s)	137, 190, 291, 369
Hsp92I	GRCGYC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	5 cut(s)	22, 170, 207, 231, 438
Lsp1109I	GCAGC	2 cut(s)	188, 340
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	68
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	7 cut(s)	68, 143, 234, 331, 409, 424, 431
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	3 cut(s)	325, 467, 483
MnlI	CCTC	8 cut(s)	3, 115, 152, 199, 259, 309, 387, 402
MseI	TTAA	2 cut(s)	47, 490
MspA1I	CMGCKG	2 cut(s)	221, 428
MwoI	GCNNNNNNNGC	2 cut(s)	185, 434
NdeII	GATC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	178, 277, 355
PspFI	CCCAGC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	2 cut(s)	221, 428
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	47, 490
SatI	GCNGC	3 cut(s)	177, 276, 354
Sau3AI	GATC	1 cut(s)	133
SetI	ASST	6 cut(s)	73, 163, 186, 223, 430, 455
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	2 cut(s)	354, 461
Sse9I	AATT	3 cut(s)	325, 467, 483
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	3 cut(s)	325, 467, 483
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	47, 490
Tru9I	TTAA	2 cut(s)	47, 490
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	2 cut(s)	176, 353
TspDTI	ATGAA	2 cut(s)	69, 144
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	2 cut(s)	325, 467
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.