Rorug05G0557900

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005730
Physical Location & Seq
Forward (+)
74728344 .. 74733674
5331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0557900.1

Sequence Viewer

Length: 2154 bp
ATGAACACTCACCGCCCGGTGAGGGCGCTGTCACGTGCCCTGTCACGTGCCCTATCCCAGTCTACCTCCTCCTCCGCCGCACAACCCTCGTTCCCTCTGAAAAACGTGACCAAATCGAACTTCGAGCCGGTTCTCGTCGAGCTCCGCCGCCACGTCGCCGCCGCCGACTTCGTGGCCGTCGACCTCGAAATGAGCGGAGTCACCAGCGCGCCGTGGCGGGACTCGTTGGAGTTCGACCGCTCTGACGTCAGCTACCTCAAGGTCAAGGACTCGGCGGAGAAGTTCGCCGTGCTTCAGTTCGGCGTTTGCCCCTTTCGCTGGGACTCCTCCAAGAAATCCTTCATTGCTCATCCGCACAATTTCTATGTTTTTCCACGTCAAGAGCTTCCTGTCGAAAGCCCCACTTATGAGTTTCTCTGCCAGACTACATCAATTGACTTCTTAGCTAAATACCAGTTCGATTTCAATATGTGTATACATGAAGGAATATCTTATTTATCTAGAGGGCAGGAAAATGAAGCACTGAGACGTTTTCATTTGGCATATGAGGATGGATCTAAGTTGAAAGAAGTAAGGGATGCCCCTTTGGTTAAGATGGCTGACACTCTCTTCACTGAACGGATGAAGAATACATTTACTGAGTGGCGTGATGGGTTGTTCAGAAATAAAAATGGAGGGTTCCAATTTCAGGGAATCTCAAATGACCGCCAGCAACATTTAGAAACCATTTTTTTCAAGATGCGTCCTGCTCTTAGTCTAAATGGATTTACATCTCATCAGCTTAAATTGATTCAACTGGTCATTAGAAGGCATTTCCAAGATCTTTCTTATGTTCAGGTAAATGGGGAAAATTCATGTCAACAGCAACTAGTTGTGCATACAGATTCGAAGGATGACAGGGAGTCACTTATGAAAGAGGTGAAGGATGAGCATCTTAGACAAGCAGAGACCAAGGTTCAAGCTGCGGTGGGGTTTCGTCATGTTATTGACCTTCTTTCCTCAGAAAAAAAGCTGATTGTTGGTCACAATTGCTTTCTGGATATTGCACATATATACAGCAAATTTGTAGGTCCTCTTCCTTCAACTGCTGAAGAATTTGTATCTTCTGTTAACAAGTGTTTTCCGCACATCCTTGACACCAAAGTACTCTTGAATGCTAATATTGGGCTTCAACAACGGATGAAGAAATCCCAAACATCACTCTCGTCAGCATTTGCATCATTATGTCCACAAATTTCACTGGGGGCGAAAAGCACTGATCTGGCATTCCAATTGTGTGTCAAGGTTGAGGTTCAGGTTGATGATTTGAGGTCCTCCAACTGGAATTCTGGAGCCAAACATGAAGCTGGATATGATGCTTTTATGACAGGATGTGTCTTTGCTCAGGCCTGCAGTCATCTAGGTATTGATTTTGAAGCATGTTTGCCCTCTGAAAAGTTGTCCCACAATGAAAAGCTCCAGAAGCACATCAACCTTCTATTCCTTAGTTGGAGTAAAGGAGATGTTATTGATTTAACAACTGGAAATAAGAATGCGATGTCTGTAGGATCTAAGAACAACAAAAAACGTTACTTGCAGATTTCATATGAGAAAATTGCTTTAATATGGGGATTTTCATCCAAGCTCAAGGCACGAGAGATAAGAGAATGCATCTCCAAAGTCTTTGGCCTGACCTCAGTTGTATCTATCTATCACTTGGATGAAACTGCAGTGTTTGTTCAGTTTAATAAGGAGAAATTGGTCTCTGAGTTTCTCAGTTTGAAGGACACTTTAGAGAGAAAAGATGGTCCTGCCTCGGTTTTGCATCCTCTTGCAGGACTTTTGGAAGGTGGAAATACCCGAGCTGCTGATTATGAAACTTACAAAGAAATTTGTAGTTCACCCAACGCAAAAGTCTTGTTTGCAGATCAGGCAGAGGCATTTGGTATCCAATGGAAAACCAAGTTGGTTGAAGCTAAGGCATCATTGTGCCTAGGATGTGAGAGTTCAGGTGAAAAAAATGCTTTGAATCCTGCTTCAAAGTCCGATGAAAAATCTGAAAGAAAGAACATGGAAAATGTGCAGAGTGATTCATCTACTGCATGTGTCTCAAACTATAAGATTATAGATTCTTTGATTGCTTCTAGAGGCGATAAGATCAGAACTAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

717

Amino Acids

80.59

Weight (kDa)

8.42

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 36 - 460 1.9e-102 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccBSI CCGCTC 2 cut(s) 195, 240
AccI GTMKAC 3 cut(s) 62, 180, 475
AccII CGCG 1 cut(s) 209
AclI AACGTT 1 cut(s) 1567
AclWI GGATC 2 cut(s) 562, 1555
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 6 cut(s) 850, 1061, 1094, 1233, 1324, 1869
AcuI CTGAAG 2 cut(s) 278, 1110
AcvI CACGTG 2 cut(s) 35, 47
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 1146
AfiI CCNNNNNNNGG 5 cut(s) 22, 318, 688, 1320, 1814
AhdI GACNNNNNGTC 1 cut(s) 901
AhlI ACTAGT 1 cut(s) 868
AjiI CACGTC 2 cut(s) 154, 377
AjuI GAANNNNNNNTTGG 6 cut(s) 104, 136, 323, 355, 1928, 1960
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 4 cut(s) 520, 941, 1747, 2092
AlwI GGATC 2 cut(s) 562, 1555
Ama87I CYCGRG 1 cut(s) 1839
AoxI GGCC 3 cut(s) 174, 1386, 1666
ApeKI GCWGC 2 cut(s) 962, 1844
ApoI RAATTY 6 cut(s) 850, 1061, 1094, 1233, 1324, 1869
Asp700I GAANNNNTTC 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 1972
AspLEI GCGC 3 cut(s) 28, 209, 211
AspS9I GGNCC 3 cut(s) 1070, 1311, 1787
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 5 cut(s) 31, 193, 931, 1872, 2003
AsuII TTCGAA 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 1839
AvaII GGWCC 3 cut(s) 1070, 1311, 1787
AvrII CCTAGG 1 cut(s) 1972
BaeGI GKGCMC 2 cut(s) 40, 52
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 1059, 1091
BauI CACGAG 1 cut(s) 1632
BbrPI CACGTG 2 cut(s) 35, 47
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 949, 1831
BccI CCATC 4 cut(s) 545, 589, 644, 1778
BceAI ACGGC 3 cut(s) 161, 196, 272
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciVI GTATCC 1 cut(s) 1937
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 4 cut(s) 520, 941, 1747, 2092
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 5 cut(s) 501, 869, 1400, 1973, 2124
BfmI CTRYAG 3 cut(s) 1390, 1542, 1707
BfoI RGCGCY 1 cut(s) 29
BfuI GTATCC 1 cut(s) 1937
BglII AGATCT 1 cut(s) 820
BisI GCNGC 6 cut(s) 78, 148, 159, 162, 963, 1845
BlnI CCTAGG 1 cut(s) 1972
BlsI GCNGC 6 cut(s) 79, 149, 160, 163, 964, 1846
BmcAI AGTACT 1 cut(s) 1146
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 3 cut(s) 1070, 1311, 1787
BmeRI GACNNNNNGTC 1 cut(s) 901
BmeT110I CYCGRG 1 cut(s) 1839
BmgBI CACGTC 2 cut(s) 154, 377
BmgT120I GGNCC 3 cut(s) 1070, 1311, 1787
BmiI GGNNCC 2 cut(s) 680, 1333
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 2 cut(s) 52, 1250
BmsI GCATC 8 cut(s) 568, 729, 940, 1226, 1345, 1659, 1813, 1970
BmuI ACTGGG 2 cut(s) 52, 1250
BpmI CTGGAG 2 cut(s) 1350, 1442
Bpu10I CCTNAGC 2 cut(s) 1383, 1956
Bpu14I TTCGAA 1 cut(s) 887
BpuEI CTTGAG 2 cut(s) 242, 1610
BpuMI CCSGG 1 cut(s) 17
BsaAI YACGTR 2 cut(s) 35, 47
BsaBI GATNNNNATC 3 cut(s) 769, 930, 1615
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 2 cut(s) 941, 1747
BsaJI CCNNGG 4 cut(s) 212, 951, 1794, 1972
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 318, 688, 1320, 1814
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 6 cut(s) 58, 454, 801, 1245, 1325, 1525
Bse3DI GCAATG 1 cut(s) 342
Bse8I GATNNNNATC 3 cut(s) 769, 930, 1615
BseDI CCNNGG 4 cut(s) 212, 951, 1794, 1972
BseJI GATNNNNATC 3 cut(s) 769, 930, 1615
BseLI CCNNNNNNNGG 5 cut(s) 22, 318, 688, 1320, 1814
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 7 cut(s) 515, 630, 1014, 1397, 1689, 1737, 1768
BseNI ACTGG 6 cut(s) 58, 454, 801, 1245, 1325, 1525
BsePI GCGCGC 1 cut(s) 207
BseRI GAGGAG 3 cut(s) 58, 61, 316
BseSI GKGCMC 2 cut(s) 40, 52
BseXI GCAGC 2 cut(s) 949, 1831
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 2081
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 176, 1388, 1668
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 1839
BsiSI CCGG 2 cut(s) 17, 128
BslFI GGGAC 3 cut(s) 233, 335, 1426
BslI CCNNNNNNNGG 5 cut(s) 22, 318, 688, 1320, 1814
BsmAI GTCTC 4 cut(s) 520, 941, 1747, 2092
BsmBI CGTCTC 1 cut(s) 520
BsmFI GGGAC 3 cut(s) 233, 335, 1426
BsmI GAATGC 4 cut(s) 1159, 1265, 1537, 1652
BsnI GGCC 3 cut(s) 176, 1388, 1668
Bso31I GGTCTC 2 cut(s) 941, 1747
BsoBI CYCGRG 1 cut(s) 1839
Bsp119I TTCGAA 1 cut(s) 887
Bsp1286I GDGCHC 3 cut(s) 40, 52, 144
Bsp143I GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
BspANI GGCC 3 cut(s) 176, 1388, 1668
BspCNI CTCAG 7 cut(s) 516, 631, 1013, 1396, 1688, 1738, 1767
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 680, 1333
BspMAI CTGCAG 2 cut(s) 1394, 1711
BspPI GGATC 2 cut(s) 562, 1555
BspT104I TTCGAA 1 cut(s) 887
BspTNI GGTCTC 2 cut(s) 941, 1747
BsrBI CCGCTC 2 cut(s) 195, 240
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 6 cut(s) 58, 454, 801, 1245, 1325, 1525
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 212, 951, 1794, 1972
BssHII GCGCGC 1 cut(s) 207
BssMI GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
BssNAI GTATAC 1 cut(s) 476
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 1632
BssT1I CCWWGG 2 cut(s) 951, 1972
Bst1107I GTATAC 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 1632
Bst6I CTCTTC 2 cut(s) 614, 1080
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 2 cut(s) 35, 47
BstBI TTCGAA 1 cut(s) 887
BstC8I GCNNGC 3 cut(s) 209, 710, 1390
BstDSI CCRYGG 1 cut(s) 212
BstENI CCTNNNNNAGG 1 cut(s) 1812
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 3 cut(s) 28, 209, 211
BstKTI GATC 6 cut(s) 557, 823, 1261, 1550, 1909, 2139
BstMAI GTCTC 4 cut(s) 520, 941, 1747, 2092
BstMBI GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 315, 1462, 1910
BstNSI RCATGY 2 cut(s) 1422, 2085
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 3 cut(s) 1390, 1542, 1707
BstSLI GKGCMC 2 cut(s) 40, 52
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 949, 1831
BstX2I RGATCY 3 cut(s) 554, 820, 1547
BstYI RGATCY 3 cut(s) 554, 820, 1547
BstZ17I GTATAC 1 cut(s) 476
BsuI GTATCC 1 cut(s) 1937
BsuRI GGCC 3 cut(s) 176, 1388, 1668
BtgI CCRYGG 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 1550
BtrI CACGTC 2 cut(s) 154, 377
BtsI GCAGTG 1 cut(s) 1716
BtsIMutI CAGTG 5 cut(s) 521, 612, 1238, 1254, 1716
Cac8I GCNNGC 3 cut(s) 209, 710, 1390
CfoI GCGC 3 cut(s) 28, 209, 211
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 1070, 1311, 1787
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 1145
CviAII CATG 7 cut(s) 479, 855, 980, 1340, 1419, 2050, 2082
CviQI GTAC 1 cut(s) 1145
DpnI GATC 6 cut(s) 556, 822, 1260, 1549, 1908, 2138
DpnII GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
DriI GACNNNNNGTC 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 614, 1080
Eam1105I GACNNNNNGTC 1 cut(s) 901
EarI CTCTTC 2 cut(s) 614, 1080
EciI GGCGGA 3 cut(s) 64, 134, 290
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 951, 1972
Eco147I AGGCCT 1 cut(s) 1388
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 941, 1747
Eco47I GGWCC 3 cut(s) 1070, 1311, 1787
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 278, 1110
Eco72I CACGTG 2 cut(s) 35, 47
Eco88I CYCGRG 1 cut(s) 1839
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 1812
EcoO109I RGGNCCY 2 cut(s) 1070, 1311
EcoRI GAATTC 1 cut(s) 1324
EcoT14I CCWWGG 2 cut(s) 951, 1972
EcoT22I ATGCAT 1 cut(s) 1652
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 951, 1972
Esp3I CGTCTC 1 cut(s) 520
FaeI CATG 7 cut(s) 482, 858, 983, 1343, 1422, 2053, 2085
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 388, 420
FaqI GGGAC 3 cut(s) 233, 335, 1426
FatI CATG 7 cut(s) 478, 854, 979, 1339, 1418, 2049, 2081
FauI CCCGC 1 cut(s) 210
FauNDI CATATG 2 cut(s) 544, 1585
FblI GTMKAC 3 cut(s) 62, 180, 475
Fnu4HI GCNGC 6 cut(s) 78, 148, 159, 162, 963, 1845
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 78, 148, 159, 162, 963, 1845
FspBI CTAG 5 cut(s) 501, 869, 1400, 1973, 2124
GlaI GCGC 3 cut(s) 27, 208, 210
GluI GCNGC 6 cut(s) 78, 148, 159, 162, 963, 1845
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 2 cut(s) 1350, 1442
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 3 cut(s) 176, 1388, 1668
HapII CCGG 2 cut(s) 17, 128
HgaI GACGC 1 cut(s) 731
HhaI GCGC 3 cut(s) 28, 209, 211
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 7 cut(s) 482, 858, 983, 1343, 1422, 2053, 2085
Hin6I GCGC 3 cut(s) 26, 207, 209
HinP1I GCGC 3 cut(s) 26, 207, 209
HincII GTYRAC 3 cut(s) 181, 860, 1111
HindII GTYRAC 3 cut(s) 181, 860, 1111
HpaI GTTAAC 1 cut(s) 1111
HpaII CCGG 2 cut(s) 17, 128
HphI GGTGA 5 cut(s) 31, 193, 931, 1872, 2003
Hpy166II GTNNAC 7 cut(s) 63, 181, 476, 860, 1111, 1229, 1880
Hpy188I TCNGA 9 cut(s) 99, 244, 662, 1003, 1432, 1747, 2026, 2038, 2141
Hpy188III TCNNGA 8 cut(s) 380, 501, 736, 1037, 1150, 1329, 1459, 2124
Hpy8I GTNNAC 7 cut(s) 63, 181, 476, 860, 1111, 1229, 1880
Hpy99I CGWCG 3 cut(s) 140, 158, 182
HpyCH4IV ACGT 8 cut(s) 34, 46, 105, 153, 246, 376, 529, 1567
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 1462, 1910
HpySE526I ACGT 8 cut(s) 34, 46, 105, 153, 246, 376, 529, 1567
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 7 cut(s) 482, 858, 983, 1343, 1422, 2053, 2085
HspAI GCGC 3 cut(s) 26, 207, 209
KspAI GTTAAC 1 cut(s) 1111
Kzo9I GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
LmnI GCTCC 3 cut(s) 147, 1331, 1461
Lsp1109I GCAGC 2 cut(s) 949, 1831
LweI GCATC 8 cut(s) 568, 729, 940, 1226, 1345, 1659, 1813, 1970
MaeI CTAG 5 cut(s) 501, 869, 1400, 1973, 2124
MaeII ACGT 8 cut(s) 34, 46, 105, 153, 246, 376, 529, 1567
MaeIII GTNAC 7 cut(s) 30, 42, 106, 199, 903, 1022, 1568
MalI GATC 6 cut(s) 556, 822, 1260, 1549, 1908, 2138
MbiI CCGCTC 2 cut(s) 195, 240
MboI GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
MboII GAAGA 6 cut(s) 601, 637, 1067, 1095, 1103, 1195
MfeI CAATTG 3 cut(s) 432, 1027, 1271
MflI RGATCY 3 cut(s) 554, 820, 1547
MhlI GDGCHC 3 cut(s) 40, 52, 144
MlyI GAGTC 5 cut(s) 207, 215, 263, 317, 911
MmeI TCCRAC 3 cut(s) 207, 1341, 1469
Mph1103I ATGCAT 1 cut(s) 1652
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 6 cut(s) 591, 783, 1110, 1514, 1601, 1725
MslI CAYNNNNRTG 3 cut(s) 1222, 1698, 1966
MspI CCGG 2 cut(s) 17, 128
MspR9I CCNGG 1 cut(s) 17
MunI CAATTG 3 cut(s) 432, 1027, 1271
Mva1269I GAATGC 4 cut(s) 1159, 1265, 1537, 1652
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 315, 1462, 1910
NciI CCSGG 1 cut(s) 17
NdeI CATATG 2 cut(s) 544, 1585
NdeII GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
NlaIII CATG 7 cut(s) 482, 858, 983, 1343, 1422, 2053, 2085
NlaIV GGNNCC 2 cut(s) 680, 1333
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 6 cut(s) 30, 42, 106, 199, 903, 1022
NsiI ATGCAT 1 cut(s) 1652
NspI RCATGY 2 cut(s) 1422, 2085
NspV TTCGAA 1 cut(s) 887
PauI GCGCGC 1 cut(s) 207
PceI AGGCCT 1 cut(s) 1388
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 177
PctI GAATGC 4 cut(s) 1159, 1265, 1537, 1652
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 6 cut(s) 693, 790, 884, 2008, 2069, 2108
PkrI GCNGC 6 cut(s) 79, 149, 160, 163, 964, 1846
PleI GAGTC 5 cut(s) 206, 215, 263, 317, 910
PmaCI CACGTG 2 cut(s) 35, 47
PmlI CACGTG 2 cut(s) 35, 47
PpsI GAGTC 5 cut(s) 206, 215, 263, 317, 910
Ppu21I YACGTR 2 cut(s) 35, 47
PpuMI RGGWCCY 2 cut(s) 1070, 1311
Psp124BI GAGCTC 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 1567
Psp5II RGGWCCY 2 cut(s) 1070, 1311
PspCI CACGTG 2 cut(s) 35, 47
PspFI CCCAGC 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 680, 1333
PspPI GGNCC 3 cut(s) 1070, 1311, 1787
PspPPI RGGWCCY 2 cut(s) 1070, 1311
PstI CTGCAG 2 cut(s) 1394, 1711
PsuI RGATCY 3 cut(s) 554, 820, 1547
PteI GCGCGC 1 cut(s) 207
RsaI GTAC 1 cut(s) 1146
RsaNI GTAC 1 cut(s) 1145
RseI CAYNNNNRTG 3 cut(s) 1222, 1698, 1966
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 6 cut(s) 591, 783, 1110, 1514, 1601, 1725
SatI GCNGC 6 cut(s) 78, 148, 159, 162, 963, 1845
Sau3AI GATC 6 cut(s) 554, 820, 1258, 1547, 1906, 2136
Sau96I GGNCC 3 cut(s) 1070, 1311, 1787
ScaI AGTACT 1 cut(s) 1146
SchI GAGTC 5 cut(s) 207, 215, 263, 317, 911
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 3 cut(s) 40, 52, 144
SfaNI GCATC 8 cut(s) 568, 729, 940, 1226, 1345, 1659, 1813, 1970
SfcI CTRYAG 3 cut(s) 1390, 1542, 1707
SfuI TTCGAA 1 cut(s) 887
SinI GGWCC 3 cut(s) 1070, 1311, 1787
SmiMI CAYNNNNRTG 3 cut(s) 1222, 1698, 1966
SmlI CTYRAG 2 cut(s) 257, 1625
SmoI CTYRAG 2 cut(s) 257, 1625
SpeI ACTAGT 1 cut(s) 868
SseBI AGGCCT 1 cut(s) 1388
SspI AATATT 1 cut(s) 1162
SspMI CTAG 5 cut(s) 501, 869, 1400, 1973, 2124
SstI GAGCTC 1 cut(s) 144
StuI AGGCCT 1 cut(s) 1388
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 951, 1972
TaiI ACGT 8 cut(s) 37, 49, 108, 156, 249, 379, 532, 1570
TaqI TCGA 9 cut(s) 116, 123, 138, 180, 186, 234, 393, 459, 887
TatI WGTACW 1 cut(s) 1144
TauI GCSGC 4 cut(s) 80, 150, 161, 164
TfiI GAWTC 6 cut(s) 693, 790, 884, 2008, 2069, 2108
Tru1I TTAA 6 cut(s) 591, 783, 1110, 1514, 1601, 1725
Tru9I TTAA 6 cut(s) 591, 783, 1110, 1514, 1601, 1725
TscAI CASTG 5 cut(s) 528, 619, 1245, 1261, 1716
TseFI GTSAC 6 cut(s) 30, 42, 106, 199, 903, 1022
TseI GCWGC 2 cut(s) 962, 1844
Tsp45I GTSAC 6 cut(s) 30, 42, 106, 199, 903, 1022
TspGWI ACGGA 2 cut(s) 634, 1192
TspRI CASTG 5 cut(s) 528, 619, 1245, 1261, 1716
VpaK11BI GGWCC 3 cut(s) 1070, 1311, 1787
XagI CCTNNNNNAGG 1 cut(s) 1812
XapI RAATTY 6 cut(s) 850, 1061, 1094, 1233, 1324, 1869
XbaI TCTAGA 2 cut(s) 500, 2123
XceI RCATGY 2 cut(s) 1422, 2085
XmaJI CCTAGG 1 cut(s) 1972
XmiI GTMKAC 3 cut(s) 62, 180, 475
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 5 cut(s) 501, 869, 1400, 1973, 2124
ZraI GACGTC 1 cut(s) 247
ZrmI AGTACT 1 cut(s) 1146
Zsp2I ATGCAT 1 cut(s) 1652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.