AT5G36240

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005730
Physical Location & Seq
Reverse (-)
14277972 .. 14278924
953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36240.1

Sequence Viewer

Length: 765 bp
ATGATTAAGCTACCCAATCCGATTTCTAGGGTTTGTGATCCCTTAATCATGCCGAGACATAATGATGATGAAGCAGAAGTATGTTTAAGATGTGGAGGATTTGGACATGACATGACCTTGTGCAAGTATGAGTACTCTCATGAAGATTTGAAGAATATCAAATGCTATGTCTGTAATAGCTTAGGGCATTTATGTTGTATTGAACCTGGTCATACACAGTCATGGACTGTATCTTGCTACAGATGTGGTCAACTAGGTCATACTGGACTGGCATGTGGTAGACACTACGATGATTCGGTTAGTCCATCATGCTTTATCTGTGGGAGAGAAGGGCATTTTGAGCATCAGTGCCATAATTCTTTCAGTGTATGCTTTCCAGAAGACAGTAGTGAAGATGAGTGTCAAGGCCCTGATTCTTCGAGCGTACGCTTTCAAGAAAACACTAGGGAAGAAGAAGAAGGGCATTTTGAGCATCAGTGCCCTGATTCTTCCAGTGTATGCTTTCAAGAAATCAGTAGGGAAGAAGGGTTTATCTCACTGAATTCATCGAGCAAAAGCACTTCAAAGGGCAGAGAGACTCGCCGTTTATGCTACGAATGTAAAGGAAAAGGACATATTGCTCGTGATTGCCCCAATTCCTCACAGGTAGTCTCTATCTCTCTTTCTACATTTTGTGCTTTGAGCTCTTCAGTTCTTTCCTTTCTATCATGTTATTATTCACGTATAAATTTTCTTTGTTTTTTTCAGGATAAATATGGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC

Protein Analysis

254

Amino Acids

28.6

Weight (kDa)

5.59

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 196 - 212 9.9e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 280
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 2 cut(s) 541, 727
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 2 cut(s) 134, 426
AgsI TTSAA 5 cut(s) 151, 203, 434, 506, 564
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 10, 180, 684
AluI AGCT 3 cut(s) 10, 180, 684
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 3 cut(s) 49, 569, 655
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 2 cut(s) 541, 727
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 686
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 686
BccI CCATC 1 cut(s) 313
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 3 cut(s) 49, 569, 655
BfaI CTAG 3 cut(s) 27, 254, 444
BfmI CTRYAG 1 cut(s) 238
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 352, 481
BpiI GAAGAC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 722
Bse1I ACTGG 3 cut(s) 268, 273, 492
BseBI CCWGG 1 cut(s) 207
BseNI ACTGG 3 cut(s) 268, 273, 492
BseSI GKGCMC 1 cut(s) 482
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 686
BsiWI CGTACG 1 cut(s) 424
BsmAI GTCTC 3 cut(s) 49, 569, 655
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 482, 686
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 408
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 691
BsrI ACTGG 3 cut(s) 268, 273, 492
BssMI GATC 1 cut(s) 37
BssSI CACGAG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 219, 229, 386
Bst6I CTCTTC 1 cut(s) 691
BstBAI YACGTR 1 cut(s) 722
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 3 cut(s) 49, 569, 655
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 340, 469, 588
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 482
BstV2I GAAGAC 1 cut(s) 387
BsuRI GGCC 1 cut(s) 408
BtsIMutI CAGTG 5 cut(s) 353, 370, 482, 499, 536
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 407
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 133, 425
CviAII CATG 8 cut(s) 49, 107, 112, 140, 222, 273, 309, 708
CviJI RGCY 4 cut(s) 10, 180, 408, 684
CviKI_1 RGCY 4 cut(s) 10, 180, 408, 684
CviQI GTAC 2 cut(s) 133, 425
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 691
EarI CTCTTC 1 cut(s) 691
Ecl136II GAGCTC 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 686
Eco53kI GAGCTC 1 cut(s) 684
Eco57I CTGAAG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 686
FaeI CATG 8 cut(s) 52, 110, 115, 143, 225, 276, 312, 711
FatI CATG 8 cut(s) 48, 106, 111, 139, 221, 272, 308, 707
FblI GTMKAC 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 686
FspBI CTAG 3 cut(s) 27, 254, 444
HaeIII GGCC 1 cut(s) 408
Hin1II CATG 8 cut(s) 52, 110, 115, 143, 225, 276, 312, 711
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HinfI GANTC 4 cut(s) 293, 413, 485, 577
Hpy166II GTNNAC 2 cut(s) 251, 281
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 6 cut(s) 140, 377, 434, 506, 623, 746
Hpy8I GTNNAC 2 cut(s) 251, 281
HpyAV CCTTC 3 cut(s) 323, 452, 518
HpyCH4III ACNGT 3 cut(s) 219, 229, 386
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 340, 469, 588
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 8 cut(s) 52, 110, 115, 143, 225, 276, 312, 711
Kzo9I GATC 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 691
LweI GCATC 2 cut(s) 352, 481
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 3 cut(s) 27, 254, 444
MaeII ACGT 1 cut(s) 721
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 482, 686
MluCI AATT 4 cut(s) 355, 541, 634, 727
MlyI GAGTC 1 cut(s) 571
MnlI CCTC 2 cut(s) 89, 649
MseI TTAA 3 cut(s) 6, 44, 86
MslI CAYNNNNRTG 3 cut(s) 63, 220, 288
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 340, 469, 588
NdeII GATC 1 cut(s) 37
NlaIII CATG 8 cut(s) 52, 110, 115, 143, 225, 276, 312, 711
NmeAIII GCCGAG 1 cut(s) 78
NspI RCATGY 1 cut(s) 276
PagI TCATGA 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 293, 413, 485
Pfl23II CGTACG 1 cut(s) 424
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 424
PspPI GGNCC 1 cut(s) 407
RsaI GTAC 2 cut(s) 134, 426
RsaNI GTAC 2 cut(s) 133, 425
RseI CAYNNNNRTG 3 cut(s) 63, 220, 288
SacI GAGCTC 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 691
SaqAI TTAA 3 cut(s) 6, 44, 86
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 407
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 482, 686
SetI ASST 8 cut(s) 12, 119, 182, 208, 259, 648, 686, 724
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 2 cut(s) 352, 481
SfcI CTRYAG 1 cut(s) 238
SmiMI CAYNNNNRTG 3 cut(s) 63, 220, 288
Sse9I AATT 4 cut(s) 355, 541, 634, 727
SspMI CTAG 3 cut(s) 27, 254, 444
SstI GAGCTC 1 cut(s) 686
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 3 cut(s) 219, 229, 386
TaiI ACGT 1 cut(s) 724
TaqI TCGA 2 cut(s) 419, 548
TasI AATT 4 cut(s) 355, 541, 634, 727
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 3 cut(s) 293, 413, 485
Tru1I TTAA 3 cut(s) 6, 44, 86
Tru9I TTAA 3 cut(s) 6, 44, 86
TscAI CASTG 5 cut(s) 353, 370, 482, 499, 543
TspDTI ATGAA 3 cut(s) 84, 156, 534
TspRI CASTG 5 cut(s) 353, 370, 482, 499, 543
XapI RAATTY 2 cut(s) 541, 727
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 3 cut(s) 27, 254, 444
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.