Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005730

Physical Location & Seq

Genomic Coordinates Forward (+)

18514091 .. 18518071

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G179900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCCAGAGACTGCAGAAAGGGGACAAGATTGCTTTATTTGCAAAAAAGGTGGACACTATGCTAAAGATTGTCCAGAAAAGCAGAAGAGGGGCTCATTGAAATCCCAAATATGTCTAAAATGTGGAGATTCTGGGCATGATATGTTCTCATGCAGGAATGATTATTTAACTGAGGATCTTAAGGAAATCCAATGCTATGTCTGCAAGAGATTTGGCCATTTATGTTGTGTCAAGTATGTTGATACTAGTCCCCAGGAAGTTTCTTGTTACAGATGTGGTCAATTGGGACATACTGGTATGGGATGTGTAAGTTTGCGTGGTGGGGAAACCAATGATTTTGTATCACCTCGTTTATGCTACAAGTGTGGTGAAGGTGGTCACTATGCTCGTGCATGTACAAGTTTTGCTAATACTCACCAGAGATTTGGGGAATTATCTAATTACTCTACTCCCATTTTGAAATCTCATAAGGAAAAGAGAGACTACACGGGGTTCAAGTCCGCTCCGCATGACCTAAATAAAGCTCACAAAAGAAAACAGACCCAGTATGAAGAAAGAGGTATGACAACCCCACAAAAGACTAAGCATAGAGGTGGCTGGATAATGGACGATCCAGGGGATTTCTCCCCTAGAAATGGCAAAAGGAACAGTTGGAAGTCTCCAGCAACACCACCATCTGGTAGGGTTCATGCTTCAAGTTCCAGATCCTCTAAAAAAATGTGGAAGGTTTCTGGAAGTCCAATCTCACAAGGGCAATCTAGGTCTTTTCACCACAGATATTCTGCATCAAGGTTTAGCAACTCTAGCGCTGATGGTATTAGAAGAAATTATGATTGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC

Protein Analysis

281

Amino Acids

31.7

Weight (kDa)

9.4

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12880 AT3G43490 AT3G43503 AT3G43590 AT5G36240
fragaria_vesca	FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241 FvH4_2g05241
malus_domestica	MD03G1161300.v1.1
prunus_persica	Prupe.6G179900_v2.0.a1 Prupe.6G179900_v2.0.a1
pyrus_communis	pycom03g11370 pycom11g15120
rosa_chinensis	RchiOBHm_Chr6g0255381
rosa_laevigata	RLG00000003331 RLG00000014842
rosa_multiflora	Rmu_sc0025504.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210030
rosa_rugosa	Rorug05G0557800 Rorug05G0557800 Rorug05G0557900 Rorug05G0558000.1
rosa_samantha	Rh6AG075400 Rh6BG068200 Rh6CG067900 Rh6DG064500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	503
AciI	CCGC	2 cut(s)	501, 506
AclWI	GGATC	3 cut(s)	183, 605, 699
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	1 cut(s)	397
AfeI	AGCGCT	1 cut(s)	808
AfiI	CCNNNNNNNGG	2 cut(s)	635, 677
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	100, 460, 496, 696
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	252, 613
AjuI	GAANNNNNNNTTGG	1 cut(s)	817
AluBI	AGCT	1 cut(s)	524
AluI	AGCT	1 cut(s)	524
Alw26I	GTCTC	3 cut(s)	2, 474, 663
AlwI	GGATC	3 cut(s)	183, 605, 699
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	808
AoxI	GGCC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	809
AsuHPI	GGTGA	4 cut(s)	336, 380, 407, 761
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	387
BccI	CCATC	2 cut(s)	682, 806
BciT130I	CCWGG	2 cut(s)	254, 615
BcoDI	GTCTC	3 cut(s)	2, 474, 663
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	4 cut(s)	246, 630, 759, 804
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	254, 615
BmrFI	CCNGG	2 cut(s)	254, 615
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	252, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 677
Bse1I	ACTGG	2 cut(s)	298, 544
BseBI	CCWGG	2 cut(s)	254, 615
BseDI	CCNNGG	2 cut(s)	252, 614
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	635, 677
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	298, 544
BshFI	GGCC	1 cut(s)	216
BslFI	GGGAC	3 cut(s)	36, 234, 300
BslI	CCNNNNNNNGG	2 cut(s)	635, 677
BsmAI	GTCTC	3 cut(s)	2, 474, 663
BsmFI	GGGAC	3 cut(s)	36, 234, 300
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	175, 610, 704
BspACI	CCGC	2 cut(s)	501, 506
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	3 cut(s)	183, 605, 699
BspTI	CTTAAG	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	503
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	298, 544
BssECI	CCNNGG	2 cut(s)	252, 614
BssMI	GATC	3 cut(s)	175, 610, 704
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	254, 615
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	80
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	171, 582
BstF5I	GGATG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	3 cut(s)	178, 613, 707
BstMAI	GTCTC	3 cut(s)	2, 474, 663
BstMBI	GATC	3 cut(s)	175, 610, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 201, 804
BstNI	CCWGG	2 cut(s)	254, 615
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	252, 613
BstSFI	CTRYAG	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	175, 704
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	175, 704
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	5 cut(s)	137, 150, 393, 509, 689
CviJI	RGCY	4 cut(s)	93, 216, 524, 597
CviKI_1	RGCY	4 cut(s)	93, 216, 524, 597
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	171, 582
DpnI	GATC	3 cut(s)	177, 612, 706
DpnII	GATC	3 cut(s)	175, 610, 704
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	252, 613
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	5 cut(s)	140, 153, 396, 512, 692
FaqI	GGGAC	3 cut(s)	36, 234, 300
FatI	CATG	5 cut(s)	136, 149, 392, 508, 688
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	4 cut(s)	246, 630, 759, 804
GlaI	GCGC	1 cut(s)	808
GsuI	CTGGAG	1 cut(s)	645
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	809
Hin1II	CATG	5 cut(s)	140, 153, 396, 512, 692
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	4 cut(s)	336, 380, 407, 761
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	74, 702, 732
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	365, 718
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4V	TGCA	6 cut(s)	14, 42, 153, 204, 392, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 201, 804
HpyF3I	CTNAG	2 cut(s)	171, 582
Hsp92II	CATG	5 cut(s)	140, 153, 396, 512, 692
HspAI	GCGC	1 cut(s)	807
Kzo9I	GATC	3 cut(s)	175, 610, 704
LmnI	GCTCC	1 cut(s)	508
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	4 cut(s)	246, 630, 759, 804
MaeIII	GTNAC	2 cut(s)	266, 377
MalI	GATC	3 cut(s)	177, 612, 706
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	3 cut(s)	175, 610, 704
MboII	GAAGA	3 cut(s)	97, 563, 834
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	2 cut(s)	175, 704
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	4 cut(s)	281, 431, 439, 826
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	81, 166, 357, 551, 584, 718
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	2 cut(s)	167, 180
MslI	CAYNNNNRTG	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	254, 615
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	254, 615
MwoI	GCNNNNNNNGC	3 cut(s)	39, 201, 804
NdeII	GATC	3 cut(s)	175, 610, 704
NlaIII	CATG	5 cut(s)	140, 153, 396, 512, 692
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	677
Psp6I	CCWGG	2 cut(s)	252, 613
PspGI	CCWGG	2 cut(s)	252, 613
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	175, 704
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	167, 180
Sau3AI	GATC	3 cut(s)	175, 610, 704
ScrFI	CCNGG	2 cut(s)	254, 615
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	794
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	4 cut(s)	281, 431, 439, 826
SsiI	CCGC	2 cut(s)	501, 506
SspMI	CTAG	4 cut(s)	246, 630, 759, 804
StyD4I	CCNGG	2 cut(s)	252, 613
TaaI	ACNGT	1 cut(s)	650
TasI	AATT	4 cut(s)	281, 431, 439, 826
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	167, 180
Tru9I	TTAA	2 cut(s)	167, 180
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	564, 677
Van91I	CCANNNNNTGG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	179
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	4 cut(s)	246, 630, 759, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.