Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

5774089 .. 5776342

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G13820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCATATGCAACTATTCTCATGATCTTCTCGGTGGTGGCACTAATGTCCGGCGAGAGAGCTCATGCAGCAGTGGACTGCTCATCGTTGATACTAAACATGGCTGATTGTTTGTCGTTTGTGACTAGTGGTAGTACAGTTGTCAAGCCGGAAGGAACATGTTGTTCAGGGCTTAAGACTGTGGTTAGGACAGGACCAGAATGTCTATGTGAGGCTTTCAAGAACAGTGGTTCTCTTGGTTTAACTCTTGATCTTTCTAAAGCTGCTTCTCTTCCTTCTGTTTGTAAAGTTGCTGCTCCTCCTTCTGCTCGTTGTGGCCTTTCTGTCTCTGGAGATCCTCCTGCTACTGCCCCTGGTTTATCTCCTACGGCCGGAGCAGGAGCACCCGCGTTGTCCAGTGGTGCAAATGCGGCAACTCCAGTTTCGTCCCCGAGGAGTTCCGATGCGTCCTTGCTCTCTGTATCTTTTGCATTTGTCATCTTCATGGCACTCATTTCTTCTTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

169

Amino Acids

16.82

Weight (kDa)

6.52

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	11 - 105	4.9e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 105	2.5e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	389
AciI	CCGC	2 cut(s)	387, 410
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	369
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	220
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	2 cut(s)	62, 263
AluI	AGCT	2 cut(s)	62, 263
Alw21I	GWGCWC	2 cut(s)	64, 385
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	316, 369
ApeKI	GCWGC	3 cut(s)	68, 263, 293
AspS9I	GGNCC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	64, 385
BbvI	GCAGC	3 cut(s)	80, 250, 280
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	331
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	4 cut(s)	69, 264, 294, 411
BlsI	GCNGC	4 cut(s)	70, 265, 295, 412
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	351, 402
BsaJI	CCNNGG	2 cut(s)	352, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	396, 419
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	352, 431
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	396, 419
BseRI	GAGGAG	2 cut(s)	288, 448
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	80, 250, 280
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	318, 371
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	64, 385
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	3 cut(s)	51, 149, 372
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	318, 371
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	64, 385
Bsp143I	GATC	3 cut(s)	24, 250, 334
BspACI	CCGC	2 cut(s)	387, 410
BspANI	GGCC	2 cut(s)	318, 371
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	21
BspPI	GGATC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	396, 419
BssECI	CCNNGG	2 cut(s)	352, 431
BssMI	GATC	3 cut(s)	24, 250, 334
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	139, 181, 227
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	3 cut(s)	27, 253, 337
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	3 cut(s)	24, 250, 334
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 410
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	80, 250, 280
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	318, 371
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 232, 403
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	5 cut(s)	22, 65, 100, 159, 484
CviJI	RGCY	8 cut(s)	62, 104, 148, 172, 215, 263, 318, 371
CviKI_1	RGCY	8 cut(s)	62, 104, 148, 172, 215, 263, 318, 371
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	3 cut(s)	26, 252, 336
DpnII	GATC	3 cut(s)	24, 250, 334
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	369
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	5 cut(s)	25, 68, 103, 162, 487
FaiI	YATR	8 cut(s)	7, 9, 23, 66, 101, 160, 208, 485
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	5 cut(s)	21, 64, 99, 158, 483
FauI	CCCGC	1 cut(s)	394
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	69, 264, 294, 411
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	69, 264, 294, 411
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	4 cut(s)	69, 264, 294, 411
GsuI	CTGGAG	2 cut(s)	351, 402
HaeIII	GGCC	2 cut(s)	318, 371
HapII	CCGG	3 cut(s)	51, 149, 372
HgaI	GACGC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	25, 68, 103, 162, 487
HpaII	CCGG	3 cut(s)	51, 149, 372
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	4 cut(s)	22, 220, 248, 330
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	146, 285, 312
HpyCH4III	ACNGT	3 cut(s)	139, 181, 227
HpyCH4V	TGCA	4 cut(s)	11, 68, 404, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 410
Hsp92II	CATG	5 cut(s)	25, 68, 103, 162, 487
Kzo9I	GATC	3 cut(s)	24, 250, 334
LmnI	GCTCC	3 cut(s)	301, 374, 380
Lsp1109I	GCAGC	3 cut(s)	80, 250, 280
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	26, 252, 336
MboI	GATC	3 cut(s)	24, 250, 334
MboII	GAAGA	4 cut(s)	19, 263, 472, 489
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	64, 385
MnlI	CCTC	4 cut(s)	205, 309, 348, 426
MseI	TTAA	2 cut(s)	174, 242
MslI	CAYNNNNRTG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	3 cut(s)	51, 149, 372
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	68, 410
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	3 cut(s)	24, 250, 334
NlaIII	CATG	5 cut(s)	25, 68, 103, 162, 487
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	162
PagI	TCATGA	1 cut(s)	21
PciI	ACATGT	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	70, 265, 295, 412
PscI	ACATGT	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	174, 242
SatI	GCNGC	4 cut(s)	69, 264, 294, 411
Sau3AI	GATC	3 cut(s)	24, 250, 334
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	64, 385
SetI	ASST	2 cut(s)	64, 265
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	125
SsiI	CCGC	2 cut(s)	387, 410
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	139, 181, 227
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	174, 242
Tru9I	TTAA	2 cut(s)	174, 242
TscAI	CASTG	3 cut(s)	78, 232, 403
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	68, 263, 293
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	472
TspRI	CASTG	3 cut(s)	78, 232, 403
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	162
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.