Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

25645209 .. 25646845

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCAACACACTCTTCCTTCACCGCAACAACACCTCTCTTTCTCATCGTTCTTCTATCCCTATCCTCCGTCTCAGTTCTCGGCGCATCTCACCACCACGCAACGGCGCCGGCTCCGTCTGTAGACTGTTCGACTCTCATACTCAACATGGCTGACTGTTTATCCTTCGTTTCGAGCGGAGGCACGGTGGCGAAACCGGAAGGTACATGTTGCTCTGGTCTTAAGACGGTGCTTAAAGCTGACTCTCAGTGTCTATGTGAAGCGTTTAAGAGCAGTGCTTCTCTTGGAGTTACTTTGAATATCACTAAGGCTTCTACTCTTCCCGCCGCATGCAAGCTTCACGCTCCTTCTATCGCTACTTGTGGATTGTCTGTTGCTCCAAGTACTGCTCCAGGTCTTGCTCCAGGAGTAGCTGCTGCTGGACCTGAGACAGCCGGATTTCTAGCTCCAAATCCTTCTTCAGGGAACGATGGATCTTCTTTGATTCCGACCTCGTTCACAACTGTACTCAGTGCCGTACTGTTCGTTTTGTTCTTCTCTAGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

182

Amino Acids

17.97

Weight (kDa)

6.48

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	29 - 121	1.5e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	43 - 119	2.4e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	4 cut(s)	24, 177, 324, 327
AclWI	GGATC	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	4 cut(s)	205, 385, 507, 519
AfiI	CCNNNNNNNGG	2 cut(s)	103, 461
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	391, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AluBI	AGCT	4 cut(s)	239, 337, 413, 446
AluI	AGCT	4 cut(s)	239, 337, 413, 446
Alw26I	GTCTC	2 cut(s)	76, 422
AlwI	GGATC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	413, 416
AspLEI	GCGC	2 cut(s)	86, 109
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	13, 83
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	400, 403
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	120, 500
BciT130I	CCWGG	2 cut(s)	393, 405
BcoDI	GTCTC	2 cut(s)	76, 422
BfaI	CTAG	2 cut(s)	443, 540
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	3 cut(s)	327, 414, 417
BlsI	GCNGC	3 cut(s)	328, 415, 418
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	393, 405
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	108, 114
BmrFI	CCNGG	2 cut(s)	393, 405
BmsI	GCATC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	375, 387
BsaHI	GRCGYC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 461
Bse118I	RCCGGY	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	393, 405
BseLI	CCNNNNNNNGG	2 cut(s)	103, 461
BseMII	CTCAG	4 cut(s)	87, 260, 417, 523
BseXI	GCAGC	2 cut(s)	400, 403
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	110, 197, 435
BslI	CCNNNNNNNGG	2 cut(s)	103, 461
BsmAI	GTCTC	2 cut(s)	76, 422
BsmBI	CGTCTC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	473
BspACI	CCGC	4 cut(s)	24, 177, 324, 327
BspCNI	CTCAG	4 cut(s)	86, 259, 418, 522
BspLI	GGNNCC	2 cut(s)	108, 114
BspPI	GGATC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	1 cut(s)	473
BssNI	GRCGYC	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	393, 405
Bst4CI	ACNGT	6 cut(s)	128, 158, 187, 229, 505, 522
Bst6I	CTCTTC	2 cut(s)	19, 324
BstACI	GRCGYC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	111, 331, 335
BstDEI	CTNAG	5 cut(s)	73, 246, 306, 426, 509
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	2 cut(s)	86, 109
BstKTI	GATC	1 cut(s)	476
BstMAI	GTCTC	2 cut(s)	76, 422
BstMBI	GATC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	393, 405
BstNSI	RCATGY	2 cut(s)	210, 333
BstSCI	CCNGG	2 cut(s)	391, 403
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	400, 403
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	254, 280, 517
Cac8I	GCNNGC	3 cut(s)	111, 331, 335
CfoI	GCGC	2 cut(s)	86, 109
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	4 cut(s)	204, 384, 506, 518
CviAII	CATG	3 cut(s)	148, 207, 330
CviJI	RGCY	8 cut(s)	113, 152, 239, 311, 337, 413, 434, 446
CviKI_1	RGCY	8 cut(s)	113, 152, 239, 311, 337, 413, 434, 446
CviQI	GTAC	4 cut(s)	204, 384, 506, 518
DdeI	CTNAG	5 cut(s)	73, 246, 306, 426, 509
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	1 cut(s)	475
DpnII	GATC	1 cut(s)	473
Eam1104I	CTCTTC	2 cut(s)	19, 324
EarI	CTCTTC	2 cut(s)	19, 324
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	391, 403
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	3 cut(s)	151, 210, 333
FaiI	YATR	5 cut(s)	140, 149, 208, 256, 331
FatI	CATG	3 cut(s)	147, 206, 329
FauI	CCCGC	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	327, 414, 417
Fsp4HI	GCNGC	3 cut(s)	327, 414, 417
FspBI	CTAG	2 cut(s)	443, 540
GlaI	GCGC	2 cut(s)	85, 108
GluI	GCNGC	3 cut(s)	327, 414, 417
GsuI	CTGGAG	2 cut(s)	375, 387
HaeII	RGCGCY	1 cut(s)	110
HapII	CCGG	3 cut(s)	110, 197, 435
HhaI	GCGC	2 cut(s)	86, 109
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	151, 210, 333
Hin6I	GCGC	2 cut(s)	84, 107
HinP1I	GCGC	2 cut(s)	84, 107
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	133, 242, 484
HpaII	CCGG	3 cut(s)	110, 197, 435
HphI	GGTGA	2 cut(s)	13, 83
Hpy166II	GTNNAC	2 cut(s)	124, 498
Hpy188I	TCNGA	1 cut(s)	489
Hpy8I	GTNNAC	2 cut(s)	124, 498
HpyAV	CCTTC	5 cut(s)	28, 175, 194, 357, 465
HpyCH4III	ACNGT	6 cut(s)	128, 158, 187, 229, 505, 522
HpyCH4V	TGCA	1 cut(s)	333
HpyF3I	CTNAG	5 cut(s)	73, 246, 306, 426, 509
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	151, 210, 333
HspAI	GCGC	2 cut(s)	84, 107
KasI	GGCGCC	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	473
LmnI	GCTCC	6 cut(s)	118, 349, 382, 394, 406, 451
Lsp1109I	GCAGC	2 cut(s)	400, 403
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	2 cut(s)	443, 540
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	475
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	473
MboII	GAAGA	6 cut(s)	6, 44, 311, 450, 468, 526
MflI	RGATCY	1 cut(s)	473
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	127, 236
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	4 cut(s)	45, 76, 173, 502
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	3 cut(s)	222, 234, 267
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	3 cut(s)	110, 197, 435
MspR9I	CCNGG	2 cut(s)	393, 405
MvaI	CCWGG	2 cut(s)	393, 405
NaeI	GCCGGC	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	107
NdeII	GATC	1 cut(s)	473
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	151, 210, 333
NlaIV	GGNNCC	2 cut(s)	108, 114
NmeAIII	GCCGAG	1 cut(s)	60
NspI	RCATGY	2 cut(s)	210, 333
PaeI	GCATGC	1 cut(s)	333
PciI	ACATGT	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	328, 415, 418
PleI	GAGTC	2 cut(s)	127, 236
PluTI	GGCGCC	1 cut(s)	110
PpsI	GAGTC	2 cut(s)	127, 236
PscI	ACATGT	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	391, 403
PspGI	CCWGG	2 cut(s)	391, 403
PspN4I	GGNNCC	2 cut(s)	108, 114
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	4 cut(s)	205, 385, 507, 519
RsaNI	GTAC	4 cut(s)	204, 384, 506, 518
SaqAI	TTAA	3 cut(s)	222, 234, 267
SatI	GCNGC	3 cut(s)	327, 414, 417
Sau3AI	GATC	1 cut(s)	473
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	2 cut(s)	127, 236
ScrFI	CCNGG	2 cut(s)	393, 405
SetI	ASST	9 cut(s)	37, 205, 241, 339, 397, 415, 427, 448, 494
SfaNI	GCATC	1 cut(s)	95
SfcI	CTRYAG	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	333
SsiI	CCGC	4 cut(s)	24, 177, 324, 327
SspDI	GGCGCC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	443, 540
StyD4I	CCNGG	2 cut(s)	391, 403
TaaI	ACNGT	6 cut(s)	128, 158, 187, 229, 505, 522
TaqI	TCGA	2 cut(s)	131, 173
TatI	WGTACW	2 cut(s)	383, 505
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	222, 234, 267
Tru9I	TTAA	3 cut(s)	222, 234, 267
TscAI	CASTG	3 cut(s)	254, 280, 517
TseI	GCWGC	2 cut(s)	413, 416
TspGWI	ACGGA	2 cut(s)	58, 105
TspRI	CASTG	3 cut(s)	254, 280, 517
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	459
XceI	RCATGY	2 cut(s)	210, 333
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	443, 540
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.