Rorug02G0477300

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004813
Physical Location & Seq
Reverse (-)
60870295 .. 60871083
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0477300.1

Sequence Viewer

Length: 789 bp
ATGGCTCTGTCCTCTCCTTCTCTGGCTGGCCAAGCTGTGCAGCTCAGTCCAGCTGCATCTAACCTCCTCGGTGAGGGCAGAATCACCATGCGCAAAACCGCAGCCAAGTCCAAGAATGTGTCGCCTGGCAGCCCTTGGTACGGCCCAGACCGTGTCAAGTACTTGGGGCCATTCTCCGGTGAGGCTCCATCTTACCTCACTGGAGAGTTTCCAGGTGACTACGGCTGGGACACAGCTGGGCTCTCAGCTGATCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAGGTCATCCATTCAAGATGGGCCATGCTCGGGGCTCTAGGATGTGTTTTCCCTGAACTCCTAGCTCGTAATGGAGTCAAGTTCGGAGAAGCTGTTTGGTTCAAGGCTGGAGCCCAGATATTCAGTGAGGGGGGACTAGACTACTTGGGAAACCCAAGCTTAGTCCACGCTCAAAGCATTTTGGCAATCTGGGCAACACAAGTTATCTTGATGGGTGCAGTTGAAGGCTACAGAATTGCGGGAGGGCCTCTCGGTGAGGTAGTAGACCCATTGTACCCCGGTGGGAGCTTTGACCCCTTAGGGCTTGCAGACGATCCTGAGGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAAAACGGAAGACTGGCCATGTTTTCCATGTTCGGATTCTTCGTACAAGCTATTGTTACCGGAAAGGGACCGATTGAGAACCTAGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATATGCCACAAACTTTGTTCCCGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

262

Amino Acids

27.83

Weight (kDa)

5.14

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 62 - 229 1.4e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AccI GTMKAC 1 cut(s) 546
AciI CCGC 2 cut(s) 99, 521
AclWI GGATC 2 cut(s) 245, 590
AcoI YGGCCR 2 cut(s) 28, 648
AfaI GTAC 4 cut(s) 140, 161, 557, 678
AfiI CCNNNNNNNGG 4 cut(s) 73, 140, 176, 312
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 297, 385, 506
AjnI CCWGG 2 cut(s) 124, 211
Alw21I GWGCWC 2 cut(s) 282, 633
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 245, 590
Ama87I CYCGRG 3 cut(s) 254, 281, 311
AoxI GGCC 6 cut(s) 28, 142, 167, 303, 527, 648
ApeKI GCWGC 4 cut(s) 40, 53, 101, 129
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 5 cut(s) 143, 167, 303, 527, 701
AsuC2I CCSGG 2 cut(s) 561, 780
AsuHPI GGTGA 6 cut(s) 76, 83, 191, 227, 548, 634
AvaI CYCGRG 3 cut(s) 254, 281, 311
AvaII GGWCC 1 cut(s) 701
AxyI CCTNAGG 2 cut(s) 580, 600
BalI TGGCCA 2 cut(s) 30, 650
BanII GRGCYC 5 cut(s) 243, 282, 319, 397, 633
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 2 cut(s) 282, 633
BbvI GCAGC 4 cut(s) 40, 52, 113, 141
BccI CCATC 3 cut(s) 196, 294, 487
BceAI ACGGC 2 cut(s) 157, 238
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 2 cut(s) 126, 213
BcnI CCSGG 2 cut(s) 561, 780
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 4 cut(s) 320, 344, 419, 716
BfmI CTRYAG 1 cut(s) 511
BfrI CTTAAG 1 cut(s) 617
BisI GCNGC 4 cut(s) 41, 54, 102, 130
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 4 cut(s) 42, 55, 103, 131
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 126, 213, 561, 780
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 3 cut(s) 254, 281, 311
BmgT120I GGNCC 5 cut(s) 143, 167, 303, 527, 701
BmiI GGNNCC 4 cut(s) 168, 186, 394, 702
BmrFI CCNGG 4 cut(s) 126, 213, 561, 780
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 649
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpmI CTGGAG 2 cut(s) 222, 411
Bpu1102I GCTNAGC 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 561, 780
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 67, 134, 559
BsaWI WCCGGW 2 cut(s) 176, 692
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 140, 176, 312
Bse1I ACTGG 2 cut(s) 205, 651
Bse21I CCTNAGG 2 cut(s) 580, 600
BseBI CCWGG 2 cut(s) 126, 213
BseDI CCNNGG 3 cut(s) 67, 134, 559
BseGI GGATG 2 cut(s) 288, 329
BseLI CCNNNNNNNGG 4 cut(s) 73, 140, 176, 312
BseMII CTCAG 4 cut(s) 58, 258, 591, 603
BseNI ACTGG 2 cut(s) 205, 651
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 40, 52, 113, 141
BseYI CCCAGC 2 cut(s) 225, 236
BsgI GTGCAG 2 cut(s) 59, 519
BshFI GGCC 6 cut(s) 30, 144, 169, 305, 529, 650
BsiHKAI GWGCWC 2 cut(s) 282, 633
BsiHKCI CYCGRG 3 cut(s) 254, 281, 311
BsiSI CCGG 4 cut(s) 177, 561, 693, 780
BslFI GGGAC 3 cut(s) 242, 429, 714
BslI CCNNNNNNNGG 4 cut(s) 73, 140, 176, 312
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 3 cut(s) 242, 429, 714
BsnI GGCC 6 cut(s) 30, 144, 169, 305, 529, 650
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 3 cut(s) 254, 281, 311
Bsp1286I GDGCHC 5 cut(s) 243, 282, 319, 397, 633
Bsp143I GATC 2 cut(s) 250, 595
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 2 cut(s) 99, 521
BspANI GGCC 6 cut(s) 30, 144, 169, 305, 529, 650
BspCNI CTCAG 4 cut(s) 57, 257, 592, 604
BspLI GGNNCC 4 cut(s) 168, 186, 394, 702
BspPI GGATC 2 cut(s) 245, 590
BspTI CTTAAG 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 205, 651
BssECI CCNNGG 3 cut(s) 67, 134, 559
BssMI GATC 2 cut(s) 250, 595
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 126, 213
Bst4CI ACNGT 2 cut(s) 152, 275
BstAFI CTTAAG 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 28, 588
BstDEI CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 288, 329
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 253, 598
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 250, 595
BstMWI GCNNNNNNNGC 2 cut(s) 32, 473
BstNI CCWGG 2 cut(s) 126, 213
BstSCI CCNGG 4 cut(s) 124, 211, 559, 778
BstSFI CTRYAG 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 40, 52, 113, 141
BstV2I GAAGAC 1 cut(s) 649
Bsu36I CCTNAGG 2 cut(s) 580, 600
BsuRI GGCC 6 cut(s) 30, 144, 169, 305, 529, 650
BtsCI GGATG 2 cut(s) 288, 329
BtsIMutI CAGTG 2 cut(s) 198, 412
Cac8I GCNNGC 2 cut(s) 28, 588
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 5 cut(s) 143, 167, 303, 527, 701
Csp6I GTAC 4 cut(s) 139, 160, 556, 677
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 4 cut(s) 88, 307, 652, 661
CviQI GTAC 4 cut(s) 139, 160, 556, 677
DdeI CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
DpnI GATC 2 cut(s) 252, 597
DpnII GATC 2 cut(s) 250, 595
EaeI YGGCCR 2 cut(s) 28, 648
Ecl136II GAGCTC 2 cut(s) 280, 631
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 5 cut(s) 243, 282, 319, 397, 633
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 2 cut(s) 280, 631
Eco81I CCTNAGG 2 cut(s) 580, 600
Eco88I CYCGRG 3 cut(s) 254, 281, 311
EcoICRI GAGCTC 2 cut(s) 280, 631
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 124, 211
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 5 cut(s) 243, 282, 319, 397, 633
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 4 cut(s) 91, 310, 655, 664
FaiI YATR 6 cut(s) 89, 308, 653, 662, 760, 762
FaqI GGGAC 3 cut(s) 242, 429, 714
FatI CATG 4 cut(s) 87, 306, 651, 660
FauI CCCGC 1 cut(s) 514
FauNDI CATATG 1 cut(s) 760
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 4 cut(s) 41, 54, 102, 130
FokI GGATG 2 cut(s) 275, 336
FriOI GRGCYC 5 cut(s) 243, 282, 319, 397, 633
Fsp4HI GCNGC 4 cut(s) 41, 54, 102, 130
FspBI CTAG 4 cut(s) 320, 344, 419, 716
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 41, 54, 102, 130
GsaI CCCAGC 2 cut(s) 229, 240
GsuI CTGGAG 2 cut(s) 222, 411
HaeIII GGCC 6 cut(s) 30, 144, 169, 305, 529, 650
HapII CCGG 4 cut(s) 177, 561, 693, 780
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 91, 310, 655, 664
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 3 cut(s) 81, 357, 669
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 4 cut(s) 177, 561, 693, 780
HphI GGTGA 6 cut(s) 76, 83, 191, 227, 548, 634
Hpy166II GTNNAC 3 cut(s) 448, 547, 742
Hpy188I TCNGA 2 cut(s) 368, 668
Hpy188III TCNNGA 4 cut(s) 254, 297, 490, 599
Hpy8I GTNNAC 3 cut(s) 448, 547, 742
HpyAV CCTTC 3 cut(s) 27, 500, 619
HpyCH4III ACNGT 2 cut(s) 152, 275
HpyCH4V TGCA 4 cut(s) 40, 56, 500, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 473
HpyF3I CTNAG 6 cut(s) 44, 244, 442, 580, 600, 612
Hsp92II CATG 4 cut(s) 91, 310, 655, 664
HspAI GCGC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 2 cut(s) 250, 595
LmnI GCTCC 4 cut(s) 190, 392, 567, 628
Lsp1109I GCAGC 4 cut(s) 40, 52, 113, 141
LweI GCATC 1 cut(s) 65
MaeI CTAG 4 cut(s) 320, 344, 419, 716
MaeIII GTNAC 2 cut(s) 215, 688
MalI GATC 2 cut(s) 252, 597
MboI GATC 2 cut(s) 250, 595
MboII GAAGA 2 cut(s) 654, 664
MhlI GDGCHC 5 cut(s) 243, 282, 319, 397, 633
MlsI TGGCCA 2 cut(s) 30, 650
MluCI AATT 1 cut(s) 516
MluNI TGGCCA 2 cut(s) 30, 650
MlyI GAGTC 1 cut(s) 366
Mox20I TGGCCA 2 cut(s) 30, 650
MscI TGGCCA 2 cut(s) 30, 650
MseI TTAA 2 cut(s) 618, 741
Msp20I TGGCCA 2 cut(s) 30, 650
MspA1I CMGCKG 3 cut(s) 53, 236, 248
MspCI CTTAAG 1 cut(s) 617
MspI CCGG 4 cut(s) 177, 561, 693, 780
MspR9I CCNGG 4 cut(s) 126, 213, 561, 780
MvaI CCWGG 2 cut(s) 126, 213
MwoI GCNNNNNNNGC 2 cut(s) 32, 473
NciI CCSGG 2 cut(s) 561, 780
NdeI CATATG 1 cut(s) 760
NdeII GATC 2 cut(s) 250, 595
NlaIII CATG 4 cut(s) 91, 310, 655, 664
NlaIV GGNNCC 4 cut(s) 168, 186, 394, 702
NmuCI GTSAC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PfeI GAWTC 2 cut(s) 81, 669
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 4 cut(s) 42, 55, 103, 131
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp124BI GAGCTC 2 cut(s) 282, 633
Psp6I CCWGG 2 cut(s) 124, 211
PspFI CCCAGC 2 cut(s) 225, 236
PspGI CCWGG 2 cut(s) 124, 211
PspN4I GGNNCC 4 cut(s) 168, 186, 394, 702
PspPI GGNCC 5 cut(s) 143, 167, 303, 527, 701
PspXI VCTCGAGB 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 3 cut(s) 53, 236, 248
RsaI GTAC 4 cut(s) 140, 161, 557, 678
RsaNI GTAC 4 cut(s) 139, 160, 556, 677
SacI GAGCTC 2 cut(s) 282, 633
SaqAI TTAA 2 cut(s) 618, 741
SatI GCNGC 4 cut(s) 41, 54, 102, 130
Sau3AI GATC 2 cut(s) 250, 595
Sau96I GGNCC 5 cut(s) 143, 167, 303, 527, 701
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 4 cut(s) 126, 213, 561, 780
SduI GDGCHC 5 cut(s) 243, 282, 319, 397, 633
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 281, 617
SmoI CTYRAG 2 cut(s) 281, 617
Sse9I AATT 1 cut(s) 516
SsiI CCGC 2 cut(s) 99, 521
SspMI CTAG 4 cut(s) 320, 344, 419, 716
SstI GAGCTC 2 cut(s) 282, 633
StyD4I CCNGG 4 cut(s) 124, 211, 559, 778
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 152, 275
TaqI TCGA 1 cut(s) 282
TaqII GACCGA 1 cut(s) 718
TasI AATT 1 cut(s) 516
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 81, 669
Tru1I TTAA 2 cut(s) 618, 741
Tru9I TTAA 2 cut(s) 618, 741
TscAI CASTG 2 cut(s) 205, 412
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 4 cut(s) 40, 53, 101, 129
Tsp45I GTSAC 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 205, 412
Tth111I GACNNNGTC 1 cut(s) 152
Vha464I CTTAAG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 4 cut(s) 320, 344, 419, 716
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.