Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

51114332 .. 51116281

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1411800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGAGCAGCAACGACTCTGGTGGTGGTGATGGCGGTGCTTCTGTTTGGACTTGGGGACTGCGCGGCGCCGGCTCCTGCGGTGGACTGCTCGAGCCTGATCTTGAACATGGCGGACTGCTTGTCGTTTGTGTCGAATGGGAGCACGGACACGAAGCCTGCAGGGACTTGCTGCAGTGGCCTCAAGACTGTTCTCAAAGCCGACGCTTCCTGCCTCTGTGAGGCCTTCAAAAGCAGTGCTCAACTCGGCGTCGTTTTGAACATCACCAAGGCCATCTCCCTCCCCGCCGCTTGCAAAGTCTCCGCTCCGTCTGCCTCCAACTGTGGATTATCTCTCAGTCCTGCTGGTGCTCCTGGTGGAGCACCTACCTCGCCGGCACCTTCTCCAATGTCAGGTGCTGACATTGGTGGTGCACCAGCGTCGTCGACTACTGGAGGGAATGAGCAAACACCCGCTGCATCTCCTCAGGGAAGCTCAGGTTCTTTTACGCTCGCTAGTTCGGTTGGATCCCTACTTGTTGGTCTTGTAATTGCATCATTCCCTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

184

Amino Acids

17.44

Weight (kDa)

4.66

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	22 - 108	5.3e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	30 - 108	3.9e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	67, 376
AccBSI	CCGCTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	65
AciI	CCGC	8 cut(s)	35, 65, 80, 113, 285, 288, 303, 453
AclWI	GGATC	2 cut(s)	501, 514
AcyI	GRCGYC	2 cut(s)	68, 249
AfiI	CCNNNNNNNGG	2 cut(s)	220, 392
AgsI	TTSAA	3 cut(s)	106, 229, 259
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	1 cut(s)	474
AluI	AGCT	1 cut(s)	474
Alw21I	GWGCWC	5 cut(s)	146, 241, 352, 364, 415
Alw26I	GTCTC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	501, 514
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	3 cut(s)	178, 222, 270
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	8, 171, 455
AspLEI	GCGC	2 cut(s)	65, 70
AsuHPI	GGTGA	2 cut(s)	40, 256
AvaI	CYCGRG	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	506
BanI	GGYRCC	2 cut(s)	67, 376
Bbv12I	GWGCWC	5 cut(s)	146, 241, 352, 364, 415
BbvI	GCAGC	3 cut(s)	20, 158, 442
BccI	CCATC	2 cut(s)	25, 281
BcgI	CGANNNNNNTGC	4 cut(s)	351, 385, 402, 436
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	159, 172
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	5 cut(s)	9, 66, 172, 288, 456
BlsI	GCNGC	5 cut(s)	10, 67, 173, 289, 457
Bme1390I	CCNGG	1 cut(s)	354
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	91
BmiI	GGNNCC	4 cut(s)	69, 75, 378, 508
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	467, 542
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	68, 249
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 392
Bse118I	RCCGGY	2 cut(s)	70, 373
Bse1I	ACTGG	1 cut(s)	436
Bse21I	CCTNAGG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	220, 392
BseMII	CTCAG	3 cut(s)	349, 479, 489
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	20, 158, 442
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	180, 224, 272
BshNI	GGYRCC	2 cut(s)	67, 376
BsiHKAI	GWGCWC	5 cut(s)	146, 241, 352, 364, 415
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	71, 374
BslFI	GGGAC	2 cut(s)	71, 178
BslI	CCNNNNNNNGG	2 cut(s)	220, 392
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	71, 178
BsnI	GGCC	3 cut(s)	180, 224, 272
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	5 cut(s)	146, 241, 352, 364, 415
Bsp143I	GATC	2 cut(s)	99, 506
BspACI	CCGC	8 cut(s)	35, 65, 80, 113, 285, 288, 303, 453
BspANI	GGCC	3 cut(s)	180, 224, 272
BspCNI	CTCAG	3 cut(s)	348, 478, 488
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	4 cut(s)	69, 75, 378, 508
BspMAI	CTGCAG	2 cut(s)	163, 176
BspPI	GGATC	2 cut(s)	501, 514
BspT107I	GGYRCC	2 cut(s)	67, 376
BsrBI	CCGCTC	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	70, 373
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	2 cut(s)	70, 373
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	99, 506
BssNI	GRCGYC	2 cut(s)	68, 249
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	190, 323
BstACI	GRCGYC	2 cut(s)	68, 249
BstC8I	GCNNGC	5 cut(s)	72, 159, 292, 375, 492
BstDEI	CTNAG	3 cut(s)	335, 465, 475
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	65, 70
BstKTI	GATC	2 cut(s)	102, 509
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	99, 506
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 177, 311
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	2 cut(s)	159, 172
BstSLI	GKGCMC	1 cut(s)	415
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	20, 158, 442
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	180, 224, 272
BtsI	GCAGTG	2 cut(s)	181, 241
BtsIMutI	CAGTG	2 cut(s)	181, 241
Cac8I	GCNNGC	5 cut(s)	72, 159, 292, 375, 492
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	2 cut(s)	65, 70
Cfr10I	RCCGGY	2 cut(s)	70, 373
CseI	GACGC	3 cut(s)	212, 238, 408
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	8 cut(s)	74, 96, 157, 180, 200, 224, 272, 474
CviKI_1	RGCY	8 cut(s)	74, 96, 157, 180, 200, 224, 272, 474
DdeI	CTNAG	3 cut(s)	335, 465, 475
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	2 cut(s)	101, 508
DpnII	GATC	2 cut(s)	99, 506
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	112
FaiI	YATR	1 cut(s)	110
FaqI	GGGAC	2 cut(s)	71, 178
FatI	CATG	1 cut(s)	108
FauI	CCCGC	2 cut(s)	292, 460
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	5 cut(s)	9, 66, 172, 288, 456
Fsp4HI	GCNGC	5 cut(s)	9, 66, 172, 288, 456
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	64, 69
GluI	GCNGC	5 cut(s)	9, 66, 172, 288, 456
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	180, 224, 272
HapII	CCGG	2 cut(s)	71, 374
HgaI	GACGC	3 cut(s)	212, 238, 408
HhaI	GCGC	2 cut(s)	65, 70
Hin1I	GRCGYC	2 cut(s)	68, 249
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	2 cut(s)	63, 68
HinP1I	GCGC	2 cut(s)	63, 68
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	71, 374
HphI	GGTGA	2 cut(s)	40, 256
Hpy166II	GTNNAC	3 cut(s)	85, 413, 426
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	2 cut(s)	103, 184
Hpy8I	GTNNAC	3 cut(s)	85, 413, 426
Hpy99I	CGWCG	4 cut(s)	206, 254, 424, 427
HpyAV	CCTTC	2 cut(s)	235, 390
HpyCH4III	ACNGT	2 cut(s)	190, 323
HpyCH4V	TGCA	6 cut(s)	161, 174, 294, 413, 458, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 177, 311
HpyF3I	CTNAG	3 cut(s)	335, 465, 475
Hsp92I	GRCGYC	2 cut(s)	68, 249
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	2 cut(s)	63, 68
KasI	GGCGCC	1 cut(s)	67
KroI	GCCGGC	2 cut(s)	70, 373
KroNI	GCCGGC	2 cut(s)	72, 375
Kzo9I	GATC	2 cut(s)	99, 506
LmnI	GCTCC	6 cut(s)	5, 79, 141, 310, 355, 359
Lsp1109I	GCAGC	3 cut(s)	20, 158, 442
LweI	GCATC	2 cut(s)	467, 542
MaeI	CTAG	1 cut(s)	495
MalI	GATC	2 cut(s)	101, 508
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	2 cut(s)	99, 506
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	5 cut(s)	146, 241, 352, 364, 415
MluCI	AATT	1 cut(s)	528
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	2 cut(s)	342, 484
MnlI	CCTC	8 cut(s)	191, 214, 224, 290, 325, 379, 428, 474
MroNI	GCCGGC	2 cut(s)	70, 373
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	2 cut(s)	71, 374
MspR9I	CCNGG	1 cut(s)	354
MteI	GCGCNGCGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	71, 177, 311
NaeI	GCCGGC	2 cut(s)	72, 375
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	2 cut(s)	99, 506
NgoMIV	GCCGGC	2 cut(s)	70, 373
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	4 cut(s)	69, 75, 378, 508
NmeAIII	GCCGAG	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	2 cut(s)	72, 375
PkrI	GCNGC	5 cut(s)	10, 67, 173, 289, 457
PleI	GAGTC	1 cut(s)	10
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	69, 75, 378, 508
PspXI	VCTCGAGB	1 cut(s)	91
PstI	CTGCAG	2 cut(s)	163, 176
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	506
SalI	GTCGAC	1 cut(s)	424
SatI	GCNGC	5 cut(s)	9, 66, 172, 288, 456
Sau3AI	GATC	2 cut(s)	99, 506
SbfI	CCTGCAGG	1 cut(s)	163
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	354
SdaI	CCTGCAGG	1 cut(s)	163
SduI	GDGCHC	5 cut(s)	146, 241, 352, 364, 415
SetI	ASST	6 cut(s)	367, 371, 382, 397, 476, 481
SfaNI	GCATC	2 cut(s)	467, 542
SfcI	CTRYAG	2 cut(s)	159, 172
SfoI	GGCGCC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	91, 182
SmoI	CTYRAG	2 cut(s)	91, 182
Sse8387I	CCTGCAGG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	528
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	8 cut(s)	35, 65, 80, 113, 285, 288, 303, 453
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	190, 323
TaqI	TCGA	3 cut(s)	92, 134, 425
TasI	AATT	1 cut(s)	528
TauI	GCSGC	2 cut(s)	68, 290
TscAI	CASTG	2 cut(s)	181, 241
TseI	GCWGC	3 cut(s)	8, 171, 455
TspGWI	ACGGA	2 cut(s)	161, 297
TspRI	CASTG	2 cut(s)	181, 241
VneI	GTGCAC	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.