Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

28376703 .. 28377092

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1221100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGGTGCAGGGAGAGTTTGGATCAGTATTGTAGTGGTGGTGGTGGTGGCGGTGCTAGTGTGTGGACTCGGGGACTCTGCGTCGCCGTCGCAGCACGCGGCGCCGGCCCCGTCGGTGGACTGCATTAGCCTGATCTCGACCATGGCAGACTGCTTGCCGTTTGTGTCGAACGGGAGCACCGCCACGAAGCCAGCAGAGACTTGCTGCAATGGCCTCAAGACTGTGCTCGAAGCCGACGCTTCCTGTCTCTGTGTGGCCTTCAAGAGCAGTGCTCAACTCGGCGTCGTTTTGAACGTCACCAAGGCCACCTCCCTCCCCGCCGCTTGCCAAGTCTCCGCTCCTTCCGTCGCCGACTGTGGATGTCCGTCTTTCTTCTTTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

130

Amino Acids

12.85

Weight (kDa)

4.94

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	35 - 120	4.6e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	42 - 120	2.2e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	341
AccII	CGCG	1 cut(s)	101
AciI	CCGC	6 cut(s)	53, 101, 183, 321, 324, 339
AclWI	GGATC	1 cut(s)	32
AcyI	GRCGYC	2 cut(s)	104, 285
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	265, 295
AhdI	GACNNNNNGTC	1 cut(s)	82
Alw21I	GWGCWC	3 cut(s)	182, 231, 277
Alw26I	GTCTC	3 cut(s)	194, 254, 340
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	108, 214, 258, 306
ApeKI	GCWGC	2 cut(s)	94, 207
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	103
Bbv12I	GWGCWC	3 cut(s)	182, 231, 277
BbvI	GCAGC	2 cut(s)	106, 194
BceAI	ACGGC	2 cut(s)	73, 145
BcoDI	GTCTC	3 cut(s)	194, 254, 340
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	4 cut(s)	95, 102, 208, 324
BlsI	GCNGC	4 cut(s)	96, 103, 209, 325
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	105, 111
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	104, 285
BsaJI	CCNNGG	2 cut(s)	144, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	144, 303
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	106, 194
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	4 cut(s)	110, 216, 260, 308
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	3 cut(s)	182, 231, 277
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	3 cut(s)	194, 254, 340
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	110, 216, 260, 308
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	182, 231, 277
Bsp143I	GATC	2 cut(s)	24, 135
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	6 cut(s)	53, 101, 183, 321, 324, 339
BspANI	GGCC	4 cut(s)	110, 216, 260, 308
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	105, 111
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	144, 303
BssMI	GATC	2 cut(s)	24, 135
BssNI	GRCGYC	2 cut(s)	104, 285
BssT1I	CCWWGG	2 cut(s)	144, 303
Bst4CI	ACNGT	2 cut(s)	226, 359
BstACI	GRCGYC	2 cut(s)	104, 285
BstC8I	GCNNGC	5 cut(s)	99, 108, 158, 195, 328
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	27, 138
BstMAI	GTCTC	3 cut(s)	194, 254, 340
BstMBI	GATC	2 cut(s)	24, 135
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 103, 107, 213
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	106, 194
BsuRI	GGCC	4 cut(s)	110, 216, 260, 308
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	5 cut(s)	99, 108, 158, 195, 328
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	3 cut(s)	72, 248, 274
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	7 cut(s)	110, 132, 193, 216, 236, 260, 308
CviKI_1	RGCY	7 cut(s)	110, 132, 193, 216, 236, 260, 308
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	2 cut(s)	26, 137
DpnII	GATC	2 cut(s)	24, 135
DriI	GACNNNNNGTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	144, 303
Eco88I	CYCGRG	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	144, 303
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	144, 303
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	95, 102, 208, 324
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	95, 102, 208, 324
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	4 cut(s)	95, 102, 208, 324
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	110, 216, 260, 308
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	3 cut(s)	72, 248, 274
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	2 cut(s)	104, 285
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	69, 77
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	68, 121
Hpy188III	TCNNGA	3 cut(s)	139, 220, 265
Hpy8I	GTNNAC	2 cut(s)	68, 121
Hpy99I	CGWCG	6 cut(s)	88, 94, 118, 242, 290, 353
HpyAV	CCTTC	2 cut(s)	271, 354
HpyCH4III	ACNGT	2 cut(s)	226, 359
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	11, 126, 210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 103, 107, 213
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	2 cut(s)	104, 285
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	24, 135
LmnI	GCTCC	2 cut(s)	177, 346
LpnPI	CCDG	4 cut(s)	120, 146, 207, 259
Lsp1109I	GCAGC	2 cut(s)	106, 194
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	26, 137
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	24, 135
MboII	GAAGA	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	182, 231, 277
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	63, 71
MnlI	CCTC	3 cut(s)	227, 322, 326
MroNI	GCCGGC	1 cut(s)	106
MspI	CCGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	94, 103, 107, 213
NaeI	GCCGGC	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	24, 135
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	105, 111
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	96, 103, 209, 325
PleI	GAGTC	2 cut(s)	63, 71
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	2 cut(s)	63, 71
PspN4I	GGNNCC	2 cut(s)	105, 111
PspPI	GGNCC	1 cut(s)	109
SatI	GCNGC	4 cut(s)	95, 102, 208, 324
Sau3AI	GATC	2 cut(s)	24, 135
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	63, 71
SduI	GDGCHC	3 cut(s)	182, 231, 277
SetI	ASST	3 cut(s)	10, 300, 314
SfoI	GGCGCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	6 cut(s)	53, 101, 183, 321, 324, 339
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	144, 303
TaaI	ACNGT	2 cut(s)	226, 359
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	140, 170, 231
TauI	GCSGC	2 cut(s)	104, 326
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	94, 207
Tsp45I	GTSAC	1 cut(s)	298
TspGWI	ACGGA	2 cut(s)	337, 357
TspRI	CASTG	1 cut(s)	277
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.