Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

45563038 .. 45564944

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G558100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGAGCAATGAGGGTTTGGAGTGTGCTTGTGGTGATGGCGGTGGCCATGGCGACGTTTGGGGAGTGTGGGTCGTCGCACCACGCGGCTCCGGCGCCGGCGGTGGACTGCTCGAGCCTGATCTTGAACATGGCGGACTGCTTGTCCTTTGTGTCTAATGGGAGCACCGATACAAAGCCCGCAGGGACTTGCTGCAGCGGCCTCAAGACCGTCCTCAAAGCTGACGCTGCCTGCCTCTGCGAGGCCTTCAAGAGCAGCGCTCAACTCGGCGTCGTTTTGAACATTACCAAGGCCGCCTCCCTCCCCGCTGCCTGCAAAGTCTCTGCTCCTTCTGCCACCAACTGTGGATTATCTATCACTCCTGTAGCTGCTCCTGGTCTCTCGCCGGGATCTTCTCCAACATCATCTGTTGCTGCTACACCTGAATCGTCAGTTGGAGGGAGCGAGCAGGCACCTGCTTCTCCGCCAGGGGCCTCGGGTTCTCTTATGCTTGCCAGTTCAGTTGGATCCCTGCTTGTTGGTCTTGTAGTTGCATCATTCCCTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

184

Amino Acids

17.72

Weight (kDa)

6.02

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	94, 451
AccII	CGCG	1 cut(s)	86
AciI	CCGC	9 cut(s)	41, 86, 101, 134, 180, 198, 294, 306, 464
AclWI	GGATC	3 cut(s)	397, 501, 514
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	95, 270
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	127, 250, 280
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	373, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	2 cut(s)	221, 368
AluI	AGCT	2 cut(s)	221, 368
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	325, 383
AlwI	GGATC	3 cut(s)	397, 501, 514
Ama87I	CYCGRG	2 cut(s)	112, 475
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	5 cut(s)	45, 199, 243, 291, 471
ApeKI	GCWGC	7 cut(s)	192, 195, 227, 255, 308, 368, 413
AspLEI	GCGC	2 cut(s)	97, 260
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	112, 475
BalI	TGGCCA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	506
BanI	GGYRCC	2 cut(s)	94, 451
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	7 cut(s)	179, 207, 214, 267, 295, 355, 400
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	375, 468
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	325, 383
BfmI	CTRYAG	2 cut(s)	193, 363
BfoI	RGCGCY	2 cut(s)	98, 261
BfuAI	ACCTGC	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	375, 387, 468
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	2 cut(s)	112, 475
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	5 cut(s)	90, 96, 453, 472, 508
BmrFI	CCNGG	3 cut(s)	375, 387, 468
BmsI	GCATC	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	387
BsaHI	GRCGYC	2 cut(s)	95, 270
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	48, 288, 467, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	375, 468
BseDI	CCNNGG	4 cut(s)	48, 288, 467, 474
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	495
BseXI	GCAGC	7 cut(s)	179, 207, 214, 267, 295, 355, 400
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	5 cut(s)	47, 201, 245, 293, 473
BshNI	GGYRCC	2 cut(s)	94, 451
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	2 cut(s)	112, 475
BsiSI	CCGG	3 cut(s)	92, 98, 386
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	325, 383
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	5 cut(s)	47, 201, 245, 293, 473
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	2 cut(s)	112, 475
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	120, 389, 506
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	9 cut(s)	41, 86, 101, 134, 180, 198, 294, 306, 464
BspANI	GGCC	5 cut(s)	47, 201, 245, 293, 473
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	5 cut(s)	90, 96, 453, 472, 508
BspMAI	CTGCAG	1 cut(s)	197
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	3 cut(s)	397, 501, 514
BspT107I	GGYRCC	2 cut(s)	94, 451
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	48, 288, 467, 474
BssMI	GATC	3 cut(s)	120, 389, 506
BssNI	GRCGYC	2 cut(s)	95, 270
BssT1I	CCWWGG	2 cut(s)	48, 288
Bst2UI	CCWGG	2 cut(s)	375, 468
Bst4CI	ACNGT	2 cut(s)	211, 344
BstACI	GRCGYC	2 cut(s)	95, 270
BstC8I	GCNNGC	7 cut(s)	99, 180, 232, 313, 446, 450, 492
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	2 cut(s)	98, 261
BstHHI	GCGC	2 cut(s)	97, 260
BstKTI	GATC	3 cut(s)	123, 392, 509
BstMAI	GTCTC	2 cut(s)	325, 383
BstMBI	GATC	3 cut(s)	120, 389, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 198, 227, 332
BstNI	CCWGG	2 cut(s)	375, 468
BstSCI	CCNGG	3 cut(s)	373, 385, 466
BstSFI	CTRYAG	2 cut(s)	193, 363
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	7 cut(s)	179, 207, 214, 267, 295, 355, 400
BstX2I	RGATCY	2 cut(s)	389, 506
BstYI	RGATCY	2 cut(s)	389, 506
BsuRI	GGCC	5 cut(s)	47, 201, 245, 293, 473
BtgI	CCRYGG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	7 cut(s)	99, 180, 232, 313, 446, 450, 492
CfoI	GCGC	2 cut(s)	97, 260
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	471
CseI	GACGC	2 cut(s)	233, 259
CviAII	CATG	2 cut(s)	49, 130
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	3 cut(s)	122, 391, 508
DpnII	GATC	3 cut(s)	120, 389, 506
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EciI	GGCGGA	2 cut(s)	149, 453
Eco130I	CCWWGG	2 cut(s)	48, 288
Eco147I	AGGCCT	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	383
Eco47III	AGCGCT	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	112, 475
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	373, 466
EcoT14I	CCWWGG	2 cut(s)	48, 288
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	48, 288
FaeI	CATG	2 cut(s)	52, 133
FaiI	YATR	3 cut(s)	50, 131, 488
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	48, 129
FauI	CCCGC	2 cut(s)	187, 313
GlaI	GCGC	2 cut(s)	96, 259
HaeII	RGCGCY	2 cut(s)	98, 261
HaeIII	GGCC	5 cut(s)	47, 201, 245, 293, 473
HapII	CCGG	3 cut(s)	92, 98, 386
HgaI	GACGC	2 cut(s)	233, 259
HhaI	GCGC	2 cut(s)	97, 260
Hin1I	GRCGYC	2 cut(s)	95, 270
Hin1II	CATG	2 cut(s)	52, 133
Hin6I	GCGC	2 cut(s)	95, 258
HinP1I	GCGC	2 cut(s)	95, 258
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	3 cut(s)	92, 98, 386
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	3 cut(s)	124, 205, 250
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	3 cut(s)	58, 79, 275
HpyAV	CCTTC	2 cut(s)	256, 339
HpyCH4III	ACNGT	2 cut(s)	211, 344
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	195, 315, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 198, 227, 332
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	95, 270
Hsp92II	CATG	2 cut(s)	52, 133
HspAI	GCGC	2 cut(s)	95, 258
KasI	GGCGCC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	120, 389, 506
LmnI	GCTCC	6 cut(s)	5, 94, 162, 331, 376, 441
Lsp1109I	GCAGC	7 cut(s)	179, 207, 214, 267, 295, 355, 400
LweI	GCATC	1 cut(s)	542
MaeII	ACGT	1 cut(s)	56
MalI	GATC	3 cut(s)	122, 391, 508
MboI	GATC	3 cut(s)	120, 389, 506
MboII	GAAGA	1 cut(s)	384
MflI	RGATCY	2 cut(s)	389, 506
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	47
Mly113I	GGCGCC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	415, 422, 484
MnlI	CCTC	9 cut(s)	6, 212, 224, 235, 245, 307, 311, 431, 484
Mox20I	TGGCCA	1 cut(s)	47
MreI	CGCCGGCG	1 cut(s)	97
MroNI	GCCGGC	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	198, 308
MspI	CCGG	3 cut(s)	92, 98, 386
MspR9I	CCNGG	3 cut(s)	375, 387, 468
MvaI	CCWGG	2 cut(s)	375, 468
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	92, 198, 227, 332
NaeI	GCCGGC	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	120, 389, 506
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	52, 133
NlaIV	GGNNCC	5 cut(s)	90, 96, 453, 472, 508
NmeAIII	GCCGAG	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	425
PluTI	GGCGCC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	373, 466
PspGI	CCWGG	2 cut(s)	373, 466
PspN4I	GGNNCC	5 cut(s)	90, 96, 453, 472, 508
PspPI	GGNCC	1 cut(s)	471
PspXI	VCTCGAGB	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	389, 506
Sau3AI	GATC	3 cut(s)	120, 389, 506
Sau96I	GGNCC	1 cut(s)	471
ScrFI	CCNGG	3 cut(s)	375, 387, 468
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	59, 223, 370, 424, 457
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	2 cut(s)	193, 363
SfoI	GGCGCC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	97
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	112, 203
SmoI	CTYRAG	2 cut(s)	112, 203
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	9 cut(s)	41, 86, 101, 134, 180, 198, 294, 306, 464
SspDI	GGCGCC	1 cut(s)	94
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	373, 385, 466
StyI	CCWWGG	2 cut(s)	48, 288
TaaI	ACNGT	2 cut(s)	211, 344
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	113
TauI	GCSGC	3 cut(s)	89, 201, 296
TfiI	GAWTC	1 cut(s)	425
TseI	GCWGC	7 cut(s)	192, 195, 227, 255, 308, 368, 413
XagI	CCTNNNNNAGG	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.