Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

34997018 .. 34997389

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1273500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGCACTGTGGTGGTGGTGATGGCGGTGCTGCTGTTTGGACTTGGGGACTGCGCGGCGCCGGCTTCTGCGGTGGACTGCTCGAGCCTGATCTTGAACATGGTGGATTGCTTGTCATTTATGTCGAATGGGAGCACGGACACGAAGCCGGCAGAGACTTGCTGCAATAGCCTCAAGATTGTGCTCAAAACCGACGCTTCCTGCCTCTGTGAGACCTTCAAGAGCAGTGCTCAACTCGGCGTCATTTTGAACATCACCAAGGGCACCTCCCTCCCCGCCGCTAAAGTCAACCATCAAGGAACAAAGGGCAGTCGGTGTTTGAATTTTCAGAGGATAACTTCAGTGTCTCGTCAGCCTAGTCGGAGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

124

Amino Acids

13.02

Weight (kDa)

8.89

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	21 - 94	3.2e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 91	6.5e-07	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 263
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	26, 56, 71, 276, 279
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	59, 240
AgsI	TTSAA	4 cut(s)	97, 220, 250, 322
AleI	CACNNNNGTG	1 cut(s)	11
Alw21I	GWGCWC	4 cut(s)	8, 137, 186, 232
Alw26I	GTCTC	3 cut(s)	149, 206, 351
Ama87I	CYCGRG	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	31, 162
ApoI	RAATTY	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	56, 61
AsuHPI	GGTGA	2 cut(s)	31, 247
AvaI	CYCGRG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	58, 263
Bbv12I	GWGCWC	4 cut(s)	8, 137, 186, 232
BbvI	GCAGC	2 cut(s)	18, 149
BccI	CCATC	3 cut(s)	16, 300, 360
BcoDI	GTCTC	3 cut(s)	149, 206, 351
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	4 cut(s)	32, 57, 163, 279
BlsI	GCNGC	4 cut(s)	33, 58, 164, 280
BmeT110I	CYCGRG	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	60, 265
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	59, 240
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	258
Bse118I	RCCGGY	2 cut(s)	61, 148
BseDI	CCNNGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	18, 149
Bsh1236I	CGCG	1 cut(s)	56
BshNI	GGYRCC	2 cut(s)	58, 263
BsiHKAI	GWGCWC	4 cut(s)	8, 137, 186, 232
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	62, 149
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	149, 206, 351
BsmFI	GGGAC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	5 cut(s)	8, 137, 186, 232, 266
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	5 cut(s)	26, 56, 71, 276, 279
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	60, 265
BspT107I	GGYRCC	2 cut(s)	58, 263
BspTNI	GGTCTC	1 cut(s)	206
BsrFI	RCCGGY	2 cut(s)	61, 148
BssAI	RCCGGY	2 cut(s)	61, 148
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	2 cut(s)	59, 240
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	10
BstACI	GRCGYC	2 cut(s)	59, 240
BstC8I	GCNNGC	2 cut(s)	63, 150
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	56, 61
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	3 cut(s)	149, 206, 351
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 168
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	18, 149
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	6, 232, 348
Cac8I	GCNNGC	2 cut(s)	63, 150
CfoI	GCGC	2 cut(s)	56, 61
Cfr10I	RCCGGY	2 cut(s)	61, 148
CseI	GACGC	2 cut(s)	203, 229
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	65, 87, 148, 171, 355
CviKI_1	RGCY	5 cut(s)	65, 87, 148, 171, 355
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	258
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 122
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	32, 57, 163, 279
Fsp4HI	GCNGC	4 cut(s)	32, 57, 163, 279
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	55, 60
GluI	GCNGC	4 cut(s)	32, 57, 163, 279
HaeII	RGCGCY	1 cut(s)	62
HapII	CCGG	2 cut(s)	62, 149
HgaI	GACGC	2 cut(s)	203, 229
HhaI	GCGC	2 cut(s)	56, 61
Hin1I	GRCGYC	2 cut(s)	59, 240
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	54, 59
HinP1I	GCGC	2 cut(s)	54, 59
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	62, 149
HphI	GGTGA	2 cut(s)	31, 247
Hpy166II	GTNNAC	2 cut(s)	76, 289
Hpy188I	TCNGA	2 cut(s)	330, 363
Hpy188III	TCNNGA	3 cut(s)	94, 175, 220
Hpy8I	GTNNAC	2 cut(s)	76, 289
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 168
Hsp92I	GRCGYC	2 cut(s)	59, 240
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	2 cut(s)	54, 59
KasI	GGCGCC	1 cut(s)	58
KroI	GCCGGC	2 cut(s)	61, 148
KroNI	GCCGGC	2 cut(s)	63, 150
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	75, 101, 162, 214
Lsp1109I	GCAGC	2 cut(s)	18, 149
MaeI	CTAG	1 cut(s)	357
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MhlI	GDGCHC	5 cut(s)	8, 137, 186, 232, 266
MluCI	AATT	1 cut(s)	322
Mly113I	GGCGCC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	5 cut(s)	182, 215, 277, 281, 324
MroNI	GCCGGC	2 cut(s)	61, 148
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	2 cut(s)	62, 149
MteI	GCGCNGCGC	1 cut(s)	57
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	62, 168
NaeI	GCCGGC	2 cut(s)	63, 150
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	1 cut(s)	90
NgoMIV	GCCGGC	2 cut(s)	61, 148
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	60, 265
NmeAIII	GCCGAG	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	82
PdiI	GCCGGC	2 cut(s)	63, 150
PkrI	GCNGC	4 cut(s)	33, 58, 164, 280
PluTI	GGCGCC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	60, 265
PspXI	VCTCGAGB	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	4 cut(s)	32, 57, 163, 279
Sau3AI	GATC	1 cut(s)	90
SduI	GDGCHC	5 cut(s)	8, 137, 186, 232, 266
SetI	ASST	2 cut(s)	218, 269
SfoI	GGCGCC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	82, 173
SmoI	CTYRAG	2 cut(s)	82, 173
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	5 cut(s)	26, 56, 71, 276, 279
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	83, 125
TasI	AATT	1 cut(s)	322
TauI	GCSGC	2 cut(s)	59, 281
TscAI	CASTG	3 cut(s)	13, 232, 348
TseI	GCWGC	2 cut(s)	31, 162
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	13, 232, 348
XapI	RAATTY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	82
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.